Miyakogusa Predicted Gene

Lj4g3v2825690.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2825690.2 tr|A9T6I8|A9T6I8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_192109,35.2,7e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.51729.2
         (187 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g00410.1                                                       198   2e-51
Glyma06g16220.2                                                       189   1e-48
Glyma06g16220.1                                                       189   2e-48
Glyma05g32750.1                                                       135   2e-32

>Glyma08g00410.1 
          Length = 621

 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 127/183 (69%), Gaps = 9/183 (4%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRSVKYIDKS 70
           GCR++PQE+G LGI DGPI WS+VFEVIGDFDGSA F LHGREEG+ YV   SVKYID+S
Sbjct: 116 GCRIIPQELGPLGIQDGPIQWSSVFEVIGDFDGSATFFLHGREEGMDYVYRGSVKYIDES 175

Query: 71  CNVLLLEVEP--------LKGSSLVCQSGLEFLKKVFRSYIELSRPQGAVGNDDGIQVPF 122
           CNVLLLEVEP        L  S  +  SG     +V RS  ELSR Q   GND+ + VPF
Sbjct: 176 CNVLLLEVEPREQNYGINLLQSRSLDDSGGTVSGEVCRSNRELSRLQKVGGNDEEM-VPF 234

Query: 123 SKLTFTDRGMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRRVALIQVY 182
           SKL F+DR  LL++T   VRQEVP++A GPLF R RDD DNFQKD VL ++RR    Q+ 
Sbjct: 235 SKLAFSDRRKLLEVTISLVRQEVPSVAAGPLFPRLRDDCDNFQKDFVLLKERREVFCQMN 294

Query: 183 RLG 185
             G
Sbjct: 295 NFG 297


>Glyma06g16220.2 
          Length = 630

 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 130/187 (69%), Gaps = 13/187 (6%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRSVKYIDKS 70
           GCR++PQE+G LGI +GPILW++VFEV+ D DGS +F LHGRE+GV+YV   SVK  D+S
Sbjct: 116 GCRIIPQELGPLGIEEGPILWASVFEVVSDLDGSMMFFLHGREKGVNYVYPGSVKVADRS 175

Query: 71  CNVLLLEVEP---------LKGSSLVCQSGLE---FLKKVFRSYIELSRPQGAVGNDDGI 118
           CNVLLLEVEP         L+  S V  SG+E     +KV RS  ++S  Q  VGN +G+
Sbjct: 176 CNVLLLEVEPGGCRNVSALLQSKSFVHHSGVEESSSSRKVCRSNSDVSSSQRVVGNGEGM 235

Query: 119 QVPFSKLTFTDRGMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRRVAL 178
            V F KL F+DR  LL++TT QVRQ+VP+  +GPLF   RDD +NFQKDLVL   RR  L
Sbjct: 236 -VSFGKLAFSDRRKLLEVTTSQVRQKVPDKMIGPLFPGLRDDEENFQKDLVLLWKRRSLL 294

Query: 179 IQVYRLG 185
            Q+Y++G
Sbjct: 295 SQMYKVG 301


>Glyma06g16220.1 
          Length = 632

 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 130/187 (69%), Gaps = 13/187 (6%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRSVKYIDKS 70
           GCR++PQE+G LGI +GPILW++VFEV+ D DGS +F LHGRE+GV+YV   SVK  D+S
Sbjct: 116 GCRIIPQELGPLGIEEGPILWASVFEVVSDLDGSMMFFLHGREKGVNYVYPGSVKVADRS 175

Query: 71  CNVLLLEVEP---------LKGSSLVCQSGLE---FLKKVFRSYIELSRPQGAVGNDDGI 118
           CNVLLLEVEP         L+  S V  SG+E     +KV RS  ++S  Q  VGN +G+
Sbjct: 176 CNVLLLEVEPGGCRNVSALLQSKSFVHHSGVEESSSSRKVCRSNSDVSSSQRVVGNGEGM 235

Query: 119 QVPFSKLTFTDRGMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRRVAL 178
            V F KL F+DR  LL++TT QVRQ+VP+  +GPLF   RDD +NFQKDLVL   RR  L
Sbjct: 236 -VSFGKLAFSDRRKLLEVTTSQVRQKVPDKMIGPLFPGLRDDEENFQKDLVLLWKRRSLL 294

Query: 179 IQVYRLG 185
            Q+Y++G
Sbjct: 295 SQMYKVG 301


>Glyma05g32750.1 
          Length = 538

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 101/175 (57%), Gaps = 44/175 (25%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRSVKYIDKS 70
           GCR++PQE+G LGI DGPI WS+VFEVIGDFDGSA F LHGREEG+ YV L         
Sbjct: 116 GCRIIPQELGPLGIQDGPIQWSSVFEVIGDFDGSATFFLHGREEGMDYVYL--------- 166

Query: 71  CNVLLLEVEPLKGSSLVCQSGLEFLKKVFRSYIELSRPQGAVGNDDGIQVPFSKLTFTDR 130
                          + C+ G  ++ +V R Y E                  SKL+F+DR
Sbjct: 167 ---------------ICCRVG-AWMTRVGR-YQE------------------SKLSFSDR 191

Query: 131 GMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRRVALIQVYRLG 185
             LL++T   +RQEV ++A GPLF R RDD DNFQKDLVL ++RR    ++  LG
Sbjct: 192 RKLLEVTIGLLRQEVSSVAAGPLFPRLRDDCDNFQKDLVLLKERRAIFCEMNNLG 246