Miyakogusa Predicted Gene

Lj4g3v2785650.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2785650.2 Non Chatacterized Hit- tr|I0YYP0|I0YYP0_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,28.32,5e-16,seg,NULL; CLASS II CROSSOVER JUNCTION ENDONUCLEASE
MUS81,NULL; ERCC4,ERCC4 domain; coiled-coil,NULL,CUFF.51621.2
         (558 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g31990.1                                                       644   0.0  
Glyma08g15310.2                                                       328   1e-89
Glyma08g15310.1                                                       328   1e-89

>Glyma05g31990.1 
          Length = 536

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/587 (59%), Positives = 384/587 (65%), Gaps = 80/587 (13%)

Query: 1   MEPIILSDEDDPSTPFPVHSKKRRTGPDPNP---ATVYIVVDDXXXXXXXXXXXXXXXXI 57
           M+PIILSDE+DPSTPFP+  KKRRT PDPNP    TV+++ DD                I
Sbjct: 1   MDPIILSDEEDPSTPFPLRPKKRRTEPDPNPNPNRTVFVIDDDPTPHKSATPS------I 54

Query: 58  VAETPMSPLLDSDVAIVKCTRRTSDTSARVSP--------------------------SA 91
           V ETPMS L DSD+AIVKCT   SD +ARVSP                          ++
Sbjct: 55  VPETPMSALFDSDIAIVKCTI-PSDPTARVSPKKFSDNELENCGMDKPVENEPRDSRWTS 113

Query: 92  TGKFSGISQMICLESDNESEQSGKGNWNDNETMGWSSDLVGNSRWTSNPIEPLSSPESLN 151
             + SG S  ICLESDNE E  G G   +NE        +  SRWTSN +   SSPE   
Sbjct: 114 NSRESGSSPHICLESDNELENCGMGERGENE--------LRESRWTSNSMGFGSSPERHI 165

Query: 152 LGGNTTQTELTGDNASNPASSQTXXXXXXXXXXXXXIKRXXXXXXXXXXXXXXXXXXXEE 211
             GN TQTE+ GD+ SNPASSQ              IK+                   EE
Sbjct: 166 SWGNATQTEMPGDDLSNPASSQVQEENANN------IKKSKVSAKNTTKAVGKTKMTKEE 219

Query: 212 RSRLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKFAIKSIVAKIDSKVVES 271
           RSRLM                                    GKFA+KSIVA+ID+KVVE 
Sbjct: 220 RSRLMEEKKLQKEQEKLKKAALKAEAAELKKIEKEKQKWEKGKFAMKSIVAEIDAKVVEL 279

Query: 272 GSIGGHLLTRFAEKGLKYQITSNPITGSILWSMEVPEHISQLSTERVEIPYVLLVYEADK 331
           GSIGGHLLTRFAEKGL Y ITSNPITGSILWSM+VPEHISQLSTER+EIPY+LLVYEADK
Sbjct: 280 GSIGGHLLTRFAEKGLTYHITSNPITGSILWSMKVPEHISQLSTERIEIPYILLVYEADK 339

Query: 332 FCNLTMDNSFFDQLSSIQSHYPAYTVCYLTNRLFSYINKREQEKYKNPENNSSWRRPPVE 391
           FCNL M++S FDQLSSIQS YPAYTVCYLTNRL +YINK+EQEKYKNPENNS WRRPPVE
Sbjct: 340 FCNLVMNDSLFDQLSSIQSLYPAYTVCYLTNRLLAYINKKEQEKYKNPENNSCWRRPPVE 399

Query: 392 EVLAKLTTNFTKVHSRQCVDEAELAEHVVGLTSSLASCQFRKKLTRLSVNANGSLIPKDS 451
           EVLAKLTTNF KVHSRQC DEAELAEHVVGLT SLASCQFR                   
Sbjct: 400 EVLAKLTTNFNKVHSRQCADEAELAEHVVGLTCSLASCQFR------------------- 440

Query: 452 VDRNLIKKSLWLKALVAIPKVQPRFAIAIGKKYPTMKSLLSVYMDPSKSEHEKEFLLKDL 511
                      LKALVA+PKVQPRFAIAIGKKYPTMKSLLSVYMDPSKSEHEKEFLL+DL
Sbjct: 441 -----------LKALVAMPKVQPRFAIAIGKKYPTMKSLLSVYMDPSKSEHEKEFLLQDL 489

Query: 512 MTEGLLGGDRRLGQVCSKRVYRILMARSGSIRTDDVEDGADFFERQS 558
           MTEGLLGGDRRLG+VCSKRVYRILMA+SG IRTDDVE+GADFFERQS
Sbjct: 490 MTEGLLGGDRRLGEVCSKRVYRILMAQSGCIRTDDVENGADFFERQS 536


>Glyma08g15310.2 
          Length = 422

 Score =  328 bits (841), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 153/180 (85%), Positives = 166/180 (92%)

Query: 253 GKFAIKSIVAKIDSKVVESGSIGGHLLTRFAEKGLKYQITSNPITGSILWSMEVPEHISQ 312
           GKFA+KSIVA+ID+K VESGSIGGHLLTRFAEKGL Y ITSN + GSILWSM+VPEHISQ
Sbjct: 236 GKFAMKSIVAEIDAKAVESGSIGGHLLTRFAEKGLTYHITSNLVAGSILWSMKVPEHISQ 295

Query: 313 LSTERVEIPYVLLVYEADKFCNLTMDNSFFDQLSSIQSHYPAYTVCYLTNRLFSYINKRE 372
           LSTER+EIPYVLL+YEA KFCNL M++S FDQLSSIQS YPAYTVCYLTNRL +YINK+E
Sbjct: 296 LSTERIEIPYVLLIYEAGKFCNLVMNDSLFDQLSSIQSLYPAYTVCYLTNRLLAYINKKE 355

Query: 373 QEKYKNPENNSSWRRPPVEEVLAKLTTNFTKVHSRQCVDEAELAEHVVGLTSSLASCQFR 432
           QEKYKNPEN+S WRRPPVEEVLAKLTTNF KVHSRQC+DEAELAEHVV LT SLASCQFR
Sbjct: 356 QEKYKNPENSSCWRRPPVEEVLAKLTTNFNKVHSRQCLDEAELAEHVVSLTCSLASCQFR 415



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 107/251 (42%), Gaps = 94/251 (37%)

Query: 1   MEPIILSDEDDPSTPFPVHSKKRRTGPDPNPA---TVYIVVDDXXXXXXXXXXXXXXXXI 57
           M+PI+LSDE+DPSTPFP+  KKRRT PDPNP    TV+++ DD                I
Sbjct: 1   MDPIVLSDEEDPSTPFPLRPKKRRTEPDPNPNPNRTVFVIDDD------PTPHKSATPSI 54

Query: 58  VAETPMSPLLDSDVAIVKCTRRTSDTSARV-----SPSATGKFSGISQMICLESDNESEQ 112
           V ETPM       V+++ C+   S     V     SP      SGISQMICLESDNESE 
Sbjct: 55  VPETPMYLF----VSVLICSFGFSSGIESVMLYDCSP------SGISQMICLESDNESEN 104

Query: 113 SGKGNWNDNETMG--WSSDLVG-----------------------------NSRWTSNPI 141
            G    N+NE     W S+  G                             ++RWTSN +
Sbjct: 105 CGISTRNENEARDSRWISNSGGSGRSPGICLESDNELENCGMDKPVENEPRDARWTSNLM 164

Query: 142 EPLSSP----------ESLNLG-----------------------------GNTTQTELT 162
              SSP          E+  +G                             GN TQTE+ 
Sbjct: 165 GSGSSPRICLESDNELENCGMGERDENAPRDSRWTSNSMGFGSSTERHISGGNATQTEMP 224

Query: 163 GDNASNPASSQ 173
           GD+ SNP SSQ
Sbjct: 225 GDDLSNPTSSQ 235


>Glyma08g15310.1 
          Length = 422

 Score =  328 bits (841), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 153/180 (85%), Positives = 166/180 (92%)

Query: 253 GKFAIKSIVAKIDSKVVESGSIGGHLLTRFAEKGLKYQITSNPITGSILWSMEVPEHISQ 312
           GKFA+KSIVA+ID+K VESGSIGGHLLTRFAEKGL Y ITSN + GSILWSM+VPEHISQ
Sbjct: 236 GKFAMKSIVAEIDAKAVESGSIGGHLLTRFAEKGLTYHITSNLVAGSILWSMKVPEHISQ 295

Query: 313 LSTERVEIPYVLLVYEADKFCNLTMDNSFFDQLSSIQSHYPAYTVCYLTNRLFSYINKRE 372
           LSTER+EIPYVLL+YEA KFCNL M++S FDQLSSIQS YPAYTVCYLTNRL +YINK+E
Sbjct: 296 LSTERIEIPYVLLIYEAGKFCNLVMNDSLFDQLSSIQSLYPAYTVCYLTNRLLAYINKKE 355

Query: 373 QEKYKNPENNSSWRRPPVEEVLAKLTTNFTKVHSRQCVDEAELAEHVVGLTSSLASCQFR 432
           QEKYKNPEN+S WRRPPVEEVLAKLTTNF KVHSRQC+DEAELAEHVV LT SLASCQFR
Sbjct: 356 QEKYKNPENSSCWRRPPVEEVLAKLTTNFNKVHSRQCLDEAELAEHVVSLTCSLASCQFR 415



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 107/251 (42%), Gaps = 94/251 (37%)

Query: 1   MEPIILSDEDDPSTPFPVHSKKRRTGPDPNPA---TVYIVVDDXXXXXXXXXXXXXXXXI 57
           M+PI+LSDE+DPSTPFP+  KKRRT PDPNP    TV+++ DD                I
Sbjct: 1   MDPIVLSDEEDPSTPFPLRPKKRRTEPDPNPNPNRTVFVIDDD------PTPHKSATPSI 54

Query: 58  VAETPMSPLLDSDVAIVKCTRRTSDTSARV-----SPSATGKFSGISQMICLESDNESEQ 112
           V ETPM       V+++ C+   S     V     SP      SGISQMICLESDNESE 
Sbjct: 55  VPETPMYLF----VSVLICSFGFSSGIESVMLYDCSP------SGISQMICLESDNESEN 104

Query: 113 SGKGNWNDNETMG--WSSDLVG-----------------------------NSRWTSNPI 141
            G    N+NE     W S+  G                             ++RWTSN +
Sbjct: 105 CGISTRNENEARDSRWISNSGGSGRSPGICLESDNELENCGMDKPVENEPRDARWTSNLM 164

Query: 142 EPLSSP----------ESLNLG-----------------------------GNTTQTELT 162
              SSP          E+  +G                             GN TQTE+ 
Sbjct: 165 GSGSSPRICLESDNELENCGMGERDENAPRDSRWTSNSMGFGSSTERHISGGNATQTEMP 224

Query: 163 GDNASNPASSQ 173
           GD+ SNP SSQ
Sbjct: 225 GDDLSNPTSSQ 235