Miyakogusa Predicted Gene

Lj4g3v2618650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2618650.1 Non Chatacterized Hit- tr|C0P3H6|C0P3H6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,40.32,3e-19,no
description,NULL; CPDase,2',3'-cyclic-nucleotide 3'-phosphodiesterase;
LigT-like,RNA ligase/cycli,CUFF.51380.1
         (187 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g29580.1                                                       287   5e-78

>Glyma05g29580.1 
          Length = 180

 Score =  287 bits (734), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 134/178 (75%), Positives = 152/178 (85%)

Query: 10  KKEVYSVWAIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADDALNKLRSAC 69
            + VYSVWAIPP+ V  R A LMT LRSEFGGPHF PHITVVGAI LT +DA+ KLRSAC
Sbjct: 3   NQAVYSVWAIPPEDVGARCANLMTALRSEFGGPHFHPHITVVGAIKLTPEDAVTKLRSAC 62

Query: 70  EELKAFQVTVDRVAAGTFFYQCVYLLLHPSPPVVETSAHCSNHFGYKSSTPYMPHLSLLY 129
           + L+ F VTVDRVAAG+FFYQCVYLLL P P ++ETSAHC  HFGY +STPYMPHLSLLY
Sbjct: 63  QALRPFHVTVDRVAAGSFFYQCVYLLLRPDPHLLETSAHCCTHFGYTNSTPYMPHLSLLY 122

Query: 130 GDLTDEEKQKAQERAKVLDYSLSGLSFEITRLALYKTDTEDKTLKSWEKIAECTLSSS 187
           GDL+DEEK+KAQERA  +D +L GL+F+ITRLALYKTDTEDKTLKSWEKIAECTL+ +
Sbjct: 123 GDLSDEEKRKAQERANAIDDTLGGLTFQITRLALYKTDTEDKTLKSWEKIAECTLTPN 180