Miyakogusa Predicted Gene

Lj4g3v2573940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2573940.1 Non Chatacterized Hit- tr|I1K3P5|I1K3P5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,88.3,2e-38,Sm-like
ribonucleoproteins,Like-Sm (LSM) domain; snRNP Sm
proteins,Ribonucleoprotein LSM domain, euk,CUFF.51149.1
         (94 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g28190.1                                                       169   5e-43
Glyma08g11160.1                                                       169   8e-43
Glyma11g09150.1                                                        58   3e-09
Glyma19g38130.1                                                        57   7e-09
Glyma03g35490.1                                                        57   7e-09

>Glyma05g28190.1 
          Length = 141

 Score =  169 bits (429), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/94 (91%), Positives = 89/94 (94%), Gaps = 1/94 (1%)

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQI 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPL+ 
Sbjct: 43  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 102

Query: 61  TDQTRHLGFIVCRGTAVMLVSPTDGTEVIVDNPF 94
           TDQTR+LG IVCRGTAVMLVSPTDGT+ I  NPF
Sbjct: 103 TDQTRNLGLIVCRGTAVMLVSPTDGTDEIA-NPF 135


>Glyma08g11160.1 
          Length = 99

 Score =  169 bits (427), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/94 (91%), Positives = 89/94 (94%), Gaps = 1/94 (1%)

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQI 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPL+ 
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61 TDQTRHLGFIVCRGTAVMLVSPTDGTEVIVDNPF 94
          TDQTR+LG IVCRGTAVMLVSPTDGT+ I  NPF
Sbjct: 61 TDQTRNLGLIVCRGTAVMLVSPTDGTDEIA-NPF 93


>Glyma11g09150.1 
          Length = 79

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 9/71 (12%)

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQITDQTRHLGF 69
          DL K++DK +Q+KL G R + GTL+G+DQ +NLV+D  VE            ++   +G 
Sbjct: 9  DLKKYMDKKLQIKLNGNRMIVGTLRGFDQFMNLVVDNTVEV---------NGNEKNDIGM 59

Query: 70 IVCRGTAVMLV 80
          +V RG +V+ V
Sbjct: 60 VVIRGNSVVTV 70


>Glyma19g38130.1 
          Length = 79

 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 9/71 (12%)

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQITDQTRHLGF 69
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G 
Sbjct: 9  DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV---------NGNEKNDIGM 59

Query: 70 IVCRGTAVMLV 80
          +V RG +V+ V
Sbjct: 60 VVIRGNSVVTV 70


>Glyma03g35490.1 
          Length = 79

 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 9/71 (12%)

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLQITDQTRHLGF 69
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G 
Sbjct: 9  DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV---------NGNEKNDIGM 59

Query: 70 IVCRGTAVMLV 80
          +V RG +V+ V
Sbjct: 60 VVIRGNSVVTV 70