Miyakogusa Predicted Gene

Lj4g3v2563550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2563550.1 tr|A9RTM1|A9RTM1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_205447,66.18,4e-19,SUBFAMILY NOT NAMED,NULL; STRESS
ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN (SERP1/RAMP4),Endoplasmic
,CUFF.51123.1
         (68 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g11040.1                                                        73   7e-14
Glyma05g28060.1                                                        72   1e-13
Glyma15g12380.1                                                        52   1e-07
Glyma09g01480.1                                                        49   2e-06

>Glyma08g11040.1 
          Length = 96

 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/36 (94%), Positives = 35/36 (97%)

Query: 1  MTTSRRLADRKVEKFEKNITKRGFVPETTAKKGKDY 36
          MTTSRRLADRKVEKFEKNITKRGFVP+TT KKGKDY
Sbjct: 1  MTTSRRLADRKVEKFEKNITKRGFVPDTTTKKGKDY 36


>Glyma05g28060.1 
          Length = 62

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/36 (94%), Positives = 35/36 (97%)

Query: 1  MTTSRRLADRKVEKFEKNITKRGFVPETTAKKGKDY 36
          MTTSRRLADRKVEKFEKNITKRGFVP+TT KKGKDY
Sbjct: 1  MTTSRRLADRKVEKFEKNITKRGFVPDTTTKKGKDY 36


>Glyma15g12380.1 
          Length = 65

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 1  MTTSRRLADRKVEKFEKNITKRGFVPETTAKKGKDYXXXXXXXXXXXXXXIGSSLFQIIR 60
          MTTS+RLADRK+ +FEKNI+K+       +KKG  Y              +GSSLFQIIR
Sbjct: 1  MTTSKRLADRKIARFEKNISKKS---SENSKKGYAYPVGPIVLGFFVFVVVGSSLFQIIR 57

Query: 61 TATSGGLA 68
          TATS G+A
Sbjct: 58 TATSRGMA 65


>Glyma09g01480.1 
          Length = 65

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 1  MTTSRRLADRKVEKFEKNITKRGFVPETTAKKGKDYXXXXXXXXXXXXXXIGSSLFQIIR 60
          MTTS+RLADRK+ +FE+NI+K+G     ++KKG  Y              +GSSLFQIIR
Sbjct: 1  MTTSKRLADRKIARFERNISKKG---SESSKKGYAYPVGPIVLGFFVFVVVGSSLFQIIR 57

Query: 61 TATSGGLA 68
          TATS G+A
Sbjct: 58 TATSRGMA 65