Miyakogusa Predicted Gene

Lj4g3v2539400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2539400.1 Non Chatacterized Hit- tr|K4CIT3|K4CIT3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40,2e-18,TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT
ALPHA,NULL; TRANSLATION INITIATION FACTOR
EIF-2B,Initia,NODE_33481_length_478_cov_109.451881.path1.1
         (147 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g37970.1                                                       236   7e-63
Glyma08g01620.1                                                       225   1e-59
Glyma01g42720.1                                                       197   4e-51
Glyma11g02720.1                                                       194   2e-50
Glyma16g01580.1                                                        95   3e-20
Glyma07g05090.1                                                        93   8e-20
Glyma01g43180.1                                                        61   5e-10
Glyma11g02320.1                                                        60   8e-10
Glyma16g34840.1                                                        56   2e-08
Glyma15g01020.1                                                        52   2e-07
Glyma05g37350.1                                                        52   2e-07
Glyma13g44250.2                                                        50   7e-07
Glyma08g02200.1                                                        50   8e-07

>Glyma05g37970.1 
          Length = 196

 Score =  236 bits (602), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 128/153 (83%), Gaps = 7/153 (4%)

Query: 1   MAKIFPQESTS---SECINSERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKGT 57
           MAK++PQ  TS   ++C+ ++RETYTLW+KSLV HSNGCTVYDSNGDIVYRVDNYDRKG 
Sbjct: 1   MAKVYPQIPTSPDQTQCLTTKRETYTLWLKSLVFHSNGCTVYDSNGDIVYRVDNYDRKGR 60

Query: 58  REVNLMDLRGKVLCTIKKRLLAIGSWEGHRYCSNSSYTSQEQPWFQVKRCNT---GKVAC 114
           REVNLMDLRGKVLCTIKKRLLA+G WEGHR C +S + +QEQPWFQVKRCN    GKV C
Sbjct: 61  REVNLMDLRGKVLCTIKKRLLALGCWEGHR-CISSDFGTQEQPWFQVKRCNQMIKGKVTC 119

Query: 115 QIKVGCQKYCIVRISGKAAAFKIVTKDGHIVAE 147
           QI VG QKY IVRISGKA AFKIV  DG IVAE
Sbjct: 120 QISVGSQKYSIVRISGKAEAFKIVNIDGQIVAE 152


>Glyma08g01620.1 
          Length = 149

 Score =  225 bits (574), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/146 (75%), Positives = 122/146 (83%), Gaps = 8/146 (5%)

Query: 1   MAKIFPQ----ESTSSECINSERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKG 56
           MAK++PQ        ++C+ S+RETYTLW+KSLV HSNGCTVYDSNGDIVYRVDNYDRKG
Sbjct: 1   MAKVYPQIIPTSPDQTQCLTSKRETYTLWLKSLVFHSNGCTVYDSNGDIVYRVDNYDRKG 60

Query: 57  TREVNLMDLRGKVLCTIKKRLLAIGSWEGHRYCSNSSYTSQEQPWFQVKRCNT---GKVA 113
            REVNLMDLRGKVLCTIKKRLLA+G WEGHR C +S + +QEQPWFQVKRCN    GKVA
Sbjct: 61  RREVNLMDLRGKVLCTIKKRLLALGCWEGHR-CMSSDFGTQEQPWFQVKRCNQMIKGKVA 119

Query: 114 CQIKVGCQKYCIVRISGKAAAFKIVT 139
           CQI VGCQKY +VRISGK  AFKIVT
Sbjct: 120 CQISVGCQKYSLVRISGKTEAFKIVT 145


>Glyma01g42720.1 
          Length = 194

 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/148 (64%), Positives = 114/148 (77%), Gaps = 4/148 (2%)

Query: 3   KIFPQESTSSECINSERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKGTREVNL 62
           K++PQ+ TSS C++   ETYTLWMKSL+LHSNGCTVYDSNG IVYRVDNYD KG R VNL
Sbjct: 4   KVYPQDPTSSPCMSHGPETYTLWMKSLILHSNGCTVYDSNGVIVYRVDNYDTKGRRHVNL 63

Query: 63  MDLRGKVLCTIKKRLLAIGSWEGHRYCSNSSYTSQEQPWFQVKRCN---TGKVACQIKVG 119
           +DLRG+VLCTI K+LLA G W+ +R   NS++ +QE+PWFQVKRC    T K+ CQI V 
Sbjct: 64  LDLRGRVLCTIHKKLLAFGRWDVYRGSDNSNFKTQEKPWFQVKRCYKMVTRKITCQITVE 123

Query: 120 CQKYCIVRISGKAAAFKIVTKDGHIVAE 147
           CQKYCI +I GK   F+IV  DG  VA+
Sbjct: 124 CQKYCIKKIGGK-TTFQIVNIDGDTVAD 150


>Glyma11g02720.1 
          Length = 193

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 111/149 (74%), Gaps = 4/149 (2%)

Query: 1   MAKIFPQESTSSECINSERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKGTREV 60
           M K++P + TSS C++   E+YTLWMKSLVLHSNGCTVYDSNG IVYRVDNYD KG R V
Sbjct: 1   MTKVYPHDPTSSPCMSYGPESYTLWMKSLVLHSNGCTVYDSNGVIVYRVDNYDTKGRRHV 60

Query: 61  NLMDLRGKVLCTIKKRLLAIGSWEGHRYCSNSSYTSQEQPWFQVKRCN---TGKVACQIK 117
           NL+DLRG VLCTI K+LLA G W  +R   NS +  QE+PWFQVKRC    T KV CQI 
Sbjct: 61  NLLDLRGTVLCTIHKKLLAFGRWNVYRGSDNSDFKIQEKPWFQVKRCYKMITRKVTCQIT 120

Query: 118 VGCQKYCIVRISGKAAAFKIVTKDGHIVA 146
           V C+KYCI +I+GK   F+IV  DG IVA
Sbjct: 121 VACKKYCIKKIAGK-TTFQIVNIDGDIVA 148


>Glyma16g01580.1 
          Length = 201

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 12/158 (7%)

Query: 1   MAKIFPQESTSSECINS--ERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKGTR 58
           M K+ PQ   S    N   ++ET+TLWMKSLVL+  GCTV+DSNG I YRVDNY+ K   
Sbjct: 1   MGKVHPQALNSYTTCNFTCKQETFTLWMKSLVLNGKGCTVFDSNGQIAYRVDNYNCKHRD 60

Query: 59  EVNLMDLRGKVLCTIKKRLLAIGS-WEGHRYCSNSSYTSQEQPWFQVKRC---NTGKVAC 114
           EV+LMD  G +L T+ K+   +   WEG+R+   ++    ++P F+V +    + G    
Sbjct: 61  EVHLMDQNGDILFTMLKKQYKLSRFWEGYRFPVPATRNDHKRPCFRVSKTYKISRGGSTY 120

Query: 115 QIKVGCQK-----YCIVRISGKAAAFKIVTKDGHIVAE 147
           ++++G  K     + I R +  +A  KI  + G +VAE
Sbjct: 121 EVELGLDKNQPYTHKIERNTFNSAC-KISNELGVVVAE 157


>Glyma07g05090.1 
          Length = 197

 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 1   MAKIFPQESTSSECINSERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKGTREV 60
           M K+ PQ   SS     ++ET+TLWMKSLVL+  GCTV+DSNG I YRVDNY+ +   EV
Sbjct: 1   MGKVHPQALNSS--TTCKQETFTLWMKSLVLNGKGCTVFDSNGQIAYRVDNYNCRHRDEV 58

Query: 61  NLMDLRGKVLCTIKKRLLAIGS-WEGHRYCSNSSYTSQEQPWFQVKR 106
           +LMD  G +L T+ K+   +   WEG+R+    +    + P F+V +
Sbjct: 59  HLMDQNGDILFTMLKKQYKLSRFWEGYRFPVPGTRNDHKGPCFRVSK 105


>Glyma01g43180.1 
          Length = 227

 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 15/95 (15%)

Query: 3  KIFPQESTSSECINSERE------------TYTLWMKSLVLHSNGCTVYDSNGDIVYRVD 50
          ++FP+  + S  ++ E+E            + T+W KSLV+   G TV DS+G++VYRVD
Sbjct: 2  RVFPRLKSLSRAVHEEQEEEKNKAAEKLCTSLTVWRKSLVMSCKGFTVIDSHGNLVYRVD 61

Query: 51 NYDRKGTREVNLMDLRGKVLCTI--KKRLLAIGSW 83
          NY  +   EV LMD  GK + T+  +++L  + SW
Sbjct: 62 NYIGRPN-EVTLMDASGKSILTMCRRRKLGVLDSW 95


>Glyma11g02320.1 
          Length = 213

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 20/100 (20%)

Query: 3   KIFPQESTSSECINSERE-----------------TYTLWMKSLVLHSNGCTVYDSNGDI 45
           ++FP+  + S  ++ E+E                 + T+W KSL++  NG TV DS G++
Sbjct: 2   RVFPRLKSLSRAVHEEQEREHDDEEKKKAAEKLYTSLTVWRKSLLMSCNGFTVIDSYGNL 61

Query: 46  VYRVDNYDRKGTREVNLMDLRGKVLCTI--KKRLLAIGSW 83
           VYRVDNY  +   EV LMD  GK + T+  ++RL  + SW
Sbjct: 62  VYRVDNYIGRPN-EVTLMDASGKSILTMCRRRRLGLLDSW 100


>Glyma16g34840.1 
          Length = 208

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 16/96 (16%)

Query: 1  MAKIFPQESTSSECINSERET-------------YTLWMKSLVLHSNGCTVYDSN-GDIV 46
          M K+ P  + +S C+ SE ET              T+W KSL+ + NG TV+D+  G++V
Sbjct: 1  MTKVHPN-ANASVCV-SETETEKPNKNSDAMAVVLTVWKKSLLPNCNGFTVFDTQRGNLV 58

Query: 47 YRVDNYDRKGTREVNLMDLRGKVLCTIKKRLLAIGS 82
          +RVDNY  +   ++ LMD  G  L TI+++ L++ S
Sbjct: 59 FRVDNYVARNKDQILLMDAAGTPLLTIRRKRLSLVS 94


>Glyma15g01020.1 
          Length = 219

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 23  TLWMKSLVLHSNGCTVYDSNGDIVYRVDNY--DRKGTREVNLMDLRGKVLCTIKKRLLAI 80
           T++  SL    +G TVYD  G +V+RVD+Y  D +   E+ LMD  G+ L T++++  ++
Sbjct: 28  TVFKTSLFFAGDGFTVYDCKGQLVFRVDSYGPDTRDRDELVLMDPNGRCLLTVRRKRPSL 87

Query: 81  GS-WEGHRYCSNSSYTSQEQPWFQVKRCN 108
              WEG +          ++P F V+R +
Sbjct: 88  HQRWEGFK----GERMDGDKPIFSVRRAS 112


>Glyma05g37350.1 
          Length = 229

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 21  TYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKGTREVNLMDLRGKVLCTIK--KRLL 78
           T T+W KSLV+   G TV DS G++VYRVDNY      E+ LMD  G  L T++  ++L 
Sbjct: 41  TLTVWRKSLVISCKGFTVIDSYGNLVYRVDNYIMHPN-ELILMDASGNSLLTMRRSRKLG 99

Query: 79  AIGSW------EGHRYCSNSSYTSQEQP 100
            +  W       G +   + S  S+E+P
Sbjct: 100 LVDRWFVYEGEMGKQSTRSKSVKSKERP 127


>Glyma13g44250.2 
          Length = 219

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 23  TLWMKSLVLHSNGCTVYDSNGDIVYRVDNY--DRKGTREVNLMDLRGKVLCTIKKRLLAI 80
           T+   SL    +G +VYD  G +V+RVD+Y  D +   E+ LMD  G+ L T++++  ++
Sbjct: 28  TVLKTSLFFAGDGFSVYDCKGQLVFRVDSYGPDTRDIDELVLMDPNGRCLLTVRRKRPSL 87

Query: 81  GS-WEGHRYCSNSSYTSQEQPWFQVKRCN 108
              WEG +          ++P F V+R +
Sbjct: 88  HQRWEGFK----GERMDGDKPIFSVRRAS 112


>Glyma08g02200.1 
          Length = 224

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 21  TYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKGTREVNLMDLRGKVLCTIK--KRLL 78
           T T+W KSLV+   G TV D  G++VYRVDNY      EV LMD  G  + T++  ++L 
Sbjct: 42  TLTVWRKSLVISCKGFTVIDPYGNLVYRVDNYIVH-PNEVILMDASGNSVLTLRRSRKLG 100

Query: 79  AIGSW 83
            + SW
Sbjct: 101 LVDSW 105