Miyakogusa Predicted Gene

Lj4g3v2539190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2539190.1 tr|F2CYX2|F2CYX2_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,42.28,4e-17,WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain;
WD_REPEATS_REGION,WD40-rep,gene.g56951.t1.1
         (254 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g34340.1                                                       346   1e-95
Glyma20g33180.1                                                       122   4e-28
Glyma10g34380.1                                                       121   7e-28

>Glyma07g34340.1 
          Length = 400

 Score =  346 bits (888), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/267 (70%), Positives = 207/267 (77%), Gaps = 37/267 (13%)

Query: 19  RWFDWDLNKNSEIHQLGLKSSEKVLTQLEDVGLQLALAFNNDGTALAAGGEDGKLKVFKW 78
           RWFDWD NK+SEIH+L LK SEKVL+QLEDVG QLALAFNNDGTALAAGGEDG L+VFKW
Sbjct: 133 RWFDWDQNKSSEIHKLSLKLSEKVLSQLEDVGQQLALAFNNDGTALAAGGEDGNLRVFKW 192

Query: 79  PSMEIILNEPNAHSTVKDLHFSSDGKWIVSLGSGGPCRVWDVSSSIVLASLSNENREIFS 138
           PSMEIILNE NAHS++KDLHFSSDGK + SLGSGGPC+VWDVSSS+VL+SLSNENRE FS
Sbjct: 193 PSMEIILNETNAHSSLKDLHFSSDGKLLASLGSGGPCKVWDVSSSMVLSSLSNENRETFS 252

Query: 139 ACRFSQTNDSTRVLYIAAMADNRGSILTWNTPTWERMGSN-------------------- 178
           +CRFSQTND T +LYIAAM D  GSILTWNT TWERM S                     
Sbjct: 253 SCRFSQTNDETLILYIAAMTDKGGSILTWNTQTWERMASKHIIRDPISAFNVSADGKFLA 312

Query: 179 -GTPSGDIVIVSSTNMQIQTMVKKAHIGIVTALAFSPDSRLRALASVSWDSSARVTIIEE 237
            GTPSGDIV+V+STNMQI TM+KKAH+GIVTALAFSPDS  RA+ASVS DSSARVTIIEE
Sbjct: 313 CGTPSGDIVVVNSTNMQIHTMIKKAHLGIVTALAFSPDS--RAVASVSMDSSARVTIIEE 370

Query: 238 KNK--------------SAAAYFLKVE 250
           K                + AAYFL+ E
Sbjct: 371 KKTNGLSLWIALFIILLAVAAYFLRQE 397


>Glyma20g33180.1 
          Length = 429

 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 22/213 (10%)

Query: 36  LKSSEKVLTQLEDVGLQLALAFNNDGTALAAGGEDGKLKVFKWPSMEIILNEPNAHSTVK 95
           +K   K L  L+ +G Q  +AF+ DG+  AAGG DG L++ +WPSM +IL+EP AH +V+
Sbjct: 138 MKLLAKELAPLQGIGPQKCIAFSVDGSKFAAGGLDGHLRIMEWPSMRVILDEPRAHKSVR 197

Query: 96  DLHFSSDGKWIVSLGSGGPCRVWDVSSSIVLASLSNENREIFSACRFSQTNDSTRVLYIA 155
           D+ FS D +++ S  + G  R+W +   + L +LS  + E    CRFS       +    
Sbjct: 198 DMDFSLDSEFLASTSTDGSARIWKIEDGVPLTTLSRNSDEKIELCRFSMDGTKPFLFCSV 257

Query: 156 AMADNRGSILTWNTPTWERMG---------------------SNGTPSGDIVIVSSTNMQ 194
             A +      +   TW ++G                     S G+  GDI +V    MQ
Sbjct: 258 QKAGDTSVTAVYEISTWNKIGHKRLIRKSASVMSISHDGKYLSLGSKDGDICVVEVKKMQ 317

Query: 195 IQTMVKKAHIGI-VTALAFSPDSRLRALASVSW 226
           I    K+ H+G  +  L F P  R+    SV W
Sbjct: 318 IYHYSKRLHLGTNIAYLEFCPGERVLLTTSVEW 350


>Glyma10g34380.1 
          Length = 443

 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 25/218 (11%)

Query: 32  HQLGLKSSEKVLTQLEDVGLQLALAFNNDGTALAAGGEDGKLKVFKWPSMEIILNEPNAH 91
            +  +K   K L  L+ +G Q  ++F+ DG+  AAGG DG L++ +WPSM +IL+EP AH
Sbjct: 149 RETNMKLLAKELAPLQGIGPQKCISFSVDGSKFAAGGMDGHLRIMEWPSMRVILDEPRAH 208

Query: 92  STVKDLHFSSDGKWIVSLGSGGPCRVWDVSSSIVLASLSNENREIFSACRFSQTNDSTR- 150
           ++V+D+ FS D +++ S  + G  R+W     + L +LS  + E    CRFS+  D T+ 
Sbjct: 209 NSVQDMDFSLDSEFLASTSTDGSARIWKTEDGVPLNTLSRNSDEKIELCRFSK--DGTKP 266

Query: 151 VLYIAAMADNRGSILTWNTPTWERMG---------------------SNGTPSGDIVIVS 189
            L+ +    +      ++  TW ++G                     S G+  GDI +V 
Sbjct: 267 FLFCSVQKGDTSVTAVYDISTWNKIGHKRLIRKSASVMSISNDGKYLSLGSKDGDICVVE 326

Query: 190 STNMQIQTMVKKAHIGI-VTALAFSPDSRLRALASVSW 226
              MQI    K+ H+G  + +L F P  R+    SV W
Sbjct: 327 VKKMQIYHYSKRLHLGTNIASLEFCPGERVVLTTSVEW 364