Miyakogusa Predicted Gene

Lj4g3v2513900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2513900.1 Non Chatacterized Hit- tr|I1K3J0|I1K3J0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20253 PE,84.77,0,SIGNAL
RECOGNITION PARTICLE 72,NULL; SIGNAL RECOGNITION PARTICLE 72,Signal
recognition particle, SRP,CUFF.51088.1
         (662 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g27690.1                                                       955   0.0  

>Glyma05g27690.1 
          Length = 662

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/633 (77%), Positives = 534/633 (84%), Gaps = 2/633 (0%)

Query: 18  LEDLFTTLSRHIQSSAFDHAAKVADQILAVAPGDEDAIRCKVVALIKVDRVEDALSAIHS 77
           LEDLFTTL+RHIQ+SA+D+A ++ DQILA+APGDEDA+RCKVVALIK DRVED LSAI S
Sbjct: 18  LEDLFTTLNRHIQASAYDNAVRLTDQILAIAPGDEDALRCKVVALIKNDRVEDTLSAIRS 77

Query: 78  SKTLPDDFHYLKAYCLYRQNKLDEALESLRKQERDDETMLLESQILYRLGKMDACLDIYQ 137
           SK   DDFH+LKAYCLYRQNKLDEALESL++QE +DETMLLE QILYRLGKMDACLDIY+
Sbjct: 78  SKKQLDDFHFLKAYCLYRQNKLDEALESLKRQESNDETMLLECQILYRLGKMDACLDIYR 137

Query: 138 KLQKSKIDSLEINSVAAFVMAGRSSDVQGLLDSLRLKATSSFELAYNTACSLIERKKYTD 197
           KLQ SKID++EINSVAA VM+GRSS+VQG+LDSLR+KATSSFELAYNTACSLI R +YTD
Sbjct: 138 KLQNSKIDNMEINSVAALVMSGRSSEVQGMLDSLRVKATSSFELAYNTACSLIARNEYTD 197

Query: 198 AEQLLLSGRRIGQEVLMEDNLPDDEIEIELSPLAVQLAYVRQLLGNKQDAIEAYTDVIKR 257
           AEQLLLSGRRIGQEVLMEDNL DDEIEIELSP+AVQLAYV+QLLG KQDAIEAYTDVIKR
Sbjct: 198 AEQLLLSGRRIGQEVLMEDNLADDEIEIELSPIAVQLAYVQQLLGRKQDAIEAYTDVIKR 257

Query: 258 DMADESSIAVAINNLVSLRGAKDVSDSLRKLDRLKEKDAQNFRLAHGLDLKLSSKERETI 317
           DMADESSIAVA+NNLVSL+G KDVSDSLRKLDRLK+K+ Q+FRLA GLDLKLS+KE+E I
Sbjct: 258 DMADESSIAVAVNNLVSLKGPKDVSDSLRKLDRLKDKENQSFRLAPGLDLKLSAKEKEAI 317

Query: 318 YANRILLLLHANKLDQARELVSALPDMFPDSVIPVLLQAALLVRENKAGRAEEILAQFAG 377
           YANR+LLLLHANK +QARELVSALPDMFP+SVIP+ LQAALLVRENKAGRAEEILAQFA 
Sbjct: 318 YANRVLLLLHANKNEQARELVSALPDMFPESVIPIFLQAALLVRENKAGRAEEILAQFAS 377

Query: 378 KFPEKSKXXXXXXXXXXXXXXXXXXXXDSLAKISDIQHMPATVATMVSLKERAGDIEGAA 437
           KFP+KSK                    DSL KISDIQHMPATVAT+VSLKERAGDI+GAA
Sbjct: 378 KFPDKSKVVHLARAQVAAAAGHPHIAADSLTKISDIQHMPATVATLVSLKERAGDIDGAA 437

Query: 438 SVLDAATQWWSNAMTEDNKLNVIMQEAASFKLRHGKEEGAAKLYEGLVKSQGSIEALVGL 497
           +VLD AT+WWSNAMTEDNKLN I QEAA FKLRHGKEE AA+LYE LVKSQGSIEALVGL
Sbjct: 438 AVLDNATKWWSNAMTEDNKLNTITQEAALFKLRHGKEEEAAQLYEQLVKSQGSIEALVGL 497

Query: 498 ITTVARADVVKAELYEKQLKTLAGSKGIDVDSLERTSGVKQVAGP-VDVTETYEEGXXXX 556
           +TTVAR DV KAELYEKQL  L G KGIDVDSLERTSGVKQV  P V V ETYEEG    
Sbjct: 498 VTTVARMDVAKAELYEKQLNALPGLKGIDVDSLERTSGVKQVDAPRVGVAETYEEGKNKT 557

Query: 557 XXXXXXXXXXXXXXXXXXXXXXXXXXXERWLPKRERSTFRPKRKDKRAAQVRGSQGAVAK 616
                                      ERWLPKRERST+RPKRKDKRAAQVRGSQGAV +
Sbjct: 558 KSKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSTYRPKRKDKRAAQVRGSQGAVVR 617

Query: 617 EKHDAGSSSNHSNPKSNQSTSSKGVAQNAVSEQ 649
           +KHD G+SSN SN KSNQ T SKG AQNAVSEQ
Sbjct: 618 DKHDTGASSNSSNLKSNQGT-SKGAAQNAVSEQ 649