Miyakogusa Predicted Gene
- Lj4g3v2238990.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2238990.1 tr|I1LYF8|I1LYF8_SOYBN tRNA pseudouridine
synthase (Fragment) OS=Glycine max PE=3 SV=1,86.99,0,hisT_truA: tRNA
pseudouridine(38-40) synthase,Pseudouridine synthase I, TruA;
PSEUDOURIDYLATE SYNTHA,CUFF.50549.1
(273 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma13g17960.1 494 e-140
Glyma17g04570.1 362 e-100
Glyma08g03090.1 77 2e-14
Glyma16g00480.1 75 5e-14
Glyma10g36410.1 75 1e-13
Glyma12g28830.3 74 2e-13
Glyma12g28830.2 73 4e-13
Glyma12g28830.1 72 4e-13
Glyma05g36480.1 64 2e-10
>Glyma13g17960.1
Length = 289
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/269 (86%), Positives = 250/269 (92%), Gaps = 1/269 (0%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPTVQC VE+ALT+ATKLQRKDLCLVGASRTDAGVHAWGQVAHF TPFNYD
Sbjct: 20 AGWQYQESPPTVQCTVEKALTQATKLQRKDLCLVGASRTDAGVHAWGQVAHFFTPFNYDN 79
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
LE +HAALNGLLP+DIR+REISP EFHARFSAKSKIYHYKIYND IMDPFQRHFAYHS
Sbjct: 80 LEQLHAALNGLLPTDIRIREISPASAEFHARFSAKSKIYHYKIYNDAIMDPFQRHFAYHS 139
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLNSAVMREAA Y+VGKH+FSAFANASHND VPDPVKH+FRFD+KEMGALLQLEVEGS
Sbjct: 140 VYKLNSAVMREAATYFVGKHDFSAFANASHNDRVPDPVKHVFRFDLKEMGALLQLEVEGS 199
Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
GFLYRQVRNM ALL+QIG+EA+PPDI+ HILASRDRKELAKY+L APPHGLCLVSINYNE
Sbjct: 200 GFLYRQVRNMVALLLQIGREAIPPDIVPHILASRDRKELAKYSLPAPPHGLCLVSINYNE 259
Query: 246 SHLLPPPGC-PANSFGRHHTIRKCKVPFY 273
SHLLPPP PANSFGRH TIRKCKVPF+
Sbjct: 260 SHLLPPPESPPANSFGRHQTIRKCKVPFF 288
>Glyma17g04570.1
Length = 281
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/195 (86%), Positives = 181/195 (92%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
+GWQYQ SPPTVQC +E+ALTRATKLQRKD CLVGASRTDAGVHAWGQVAHF TPFNYD
Sbjct: 85 AGWQYQQSPPTVQCTLEKALTRATKLQRKDFCLVGASRTDAGVHAWGQVAHFFTPFNYDN 144
Query: 66 LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
LE++HAALNGLLP+DIRVREISP EFHARFSA SKIYHYKIYND IMDPFQRHFAYHS
Sbjct: 145 LEELHAALNGLLPTDIRVREISPASAEFHARFSAISKIYHYKIYNDAIMDPFQRHFAYHS 204
Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
YKLNSAVMREAA+Y+VGKH+FSAFANAS+NDGVPDPVKH+FRFD+KEMGALLQ+EVEGS
Sbjct: 205 VYKLNSAVMREAAKYFVGKHDFSAFANASNNDGVPDPVKHVFRFDLKEMGALLQIEVEGS 264
Query: 186 GFLYRQVRNMAALLV 200
GFLYRQVRNM LV
Sbjct: 265 GFLYRQVRNMVNSLV 279
>Glyma08g03090.1
Length = 423
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 114/285 (40%), Gaps = 49/285 (17%)
Query: 7 GWQYQMSPPTVQCVVERALTRATKLQRKDL----------CLVGASRTDAGVHAWGQVAH 56
GWQ Q TVQ +VE +L + ++ L C + A RTD GV QV
Sbjct: 131 GWQKQPGLNTVQSIVEGSLGKFVDEKKTQLLKDKGLPIEGCAIVAGRTDKGVTGLQQVCS 190
Query: 57 FVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSK--IYHYKIYNDTIM 114
F T K DI A+N P +RV +S V FH FSAK + +Y + + N
Sbjct: 191 FYTWKKDVKPRDIEDAINHAAPGKLRVISVSEVSRVFHPNFSAKWRRYLYIFPLTNGGYT 250
Query: 115 DPFQRHFAYHSPYKLN-------------------------SAVMREAAQYYVGKHNFSA 149
D + ++ +K N + ++R+ + F+
Sbjct: 251 DQSSDNGEFYDSFKYNEIHDSASKDELENEKKSYAFSISKVNRLLRKLEGKLLSYKMFAR 310
Query: 150 FANASHNDGVPDP--VKHIFRFDVK-------EMGALLQLEVEGSGFLYRQVRNMAALLV 200
AS NDG P V H +VK E ++ +E+ + FL + VR + A +
Sbjct: 311 DTKASRNDGPPTECFVYHARAMEVKLPATDHGEETKVMCVELVANRFLRKMVRVLVATSI 370
Query: 201 QIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
+ D + ++ + R+ A APP GLCLV + Y E
Sbjct: 371 REAAAGAEDDALIKLMDATCRRATAPP---APPDGLCLVDVGYTE 412
>Glyma16g00480.1
Length = 370
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 25/186 (13%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHF-------- 57
SG Q Q++ TV V+E A + K + + + +SRTDAGVHA V H
Sbjct: 64 SGSQKQLNVRTVVGVLEEAFS---KFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKR 120
Query: 58 -----VTPFNYDKLEDIHAALNGLL---PSDIRVREISPVPEEFHARFSAKSKIYHYKIY 109
+TP + + A+N L SD+ V ++ VP +FHARF A+ +IY Y++
Sbjct: 121 RPGEVLTPH---EPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQERIYFYRLL 177
Query: 110 ND-TIMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFR 168
+ + F++ A+H P +L+ M+EA + VG H+FS+F A P++ +
Sbjct: 178 SGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQ--AKSPIRTLDE 235
Query: 169 FDVKEM 174
V E+
Sbjct: 236 LSVNEV 241
>Glyma10g36410.1
Length = 336
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 50/238 (21%)
Query: 15 PTVQCVVERAL--TRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLE----- 67
PTV+ + +A TR +K+ RTD GV + GQV N E
Sbjct: 18 PTVESELFKAFEKTRLLVGNKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGN 77
Query: 68 -------------DIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIM 114
D LN +LP+DIR+ P P +FHARFS S+ Y Y + +
Sbjct: 78 SGVVLDEQHEGEIDYVRVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKEN-- 135
Query: 115 DPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANAS----HN---------DGVPD 161
LN M A VG+H+F F HN D
Sbjct: 136 --------------LNIQAMESAGNKLVGEHDFRNFCKMDAANVHNYRRRIKLFEISPTD 181
Query: 162 PVKHIFRFDVK-EMGALLQLEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILAS 218
+H F F + L +++ GS FL+ QVR M +L +GK P++I +L +
Sbjct: 182 VSQHFFPFTCRYNDNQLWVIKIRGSAFLWHQVRCMVVVLFMVGKGLESPNVIDMLLDT 239
>Glyma12g28830.3
Length = 368
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 32/189 (16%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
SG Q Q++ TV +E A + K + + + +SRTDAGVHA V H
Sbjct: 63 SGSQKQLNVRTVVGALEEAFS---KFVGQPVSVSCSSRTDAGVHALSNVCHV-------D 112
Query: 66 LEDIHAALNGLLP-------------------SDIRVREISPVPEEFHARFSAKSKIYHY 106
++ I G LP SD+ V ++ VP +FHARF A+ + Y Y
Sbjct: 113 IQRISKRRPGELPPHEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFY 172
Query: 107 KIYND-TIMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKH 165
++ + + F++ A+H P +L+ M+EA + VG H+FS+F A P++
Sbjct: 173 RLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQ--AKSPIRT 230
Query: 166 IFRFDVKEM 174
+ V E+
Sbjct: 231 LDELSVNEV 239
>Glyma12g28830.2
Length = 369
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 23/185 (12%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHF-------- 57
SG Q Q++ TV +E A + K + + + +SRTDAGVHA V H
Sbjct: 63 SGSQKQLNVRTVVGALEEAFS---KFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKR 119
Query: 58 ----VTPFNYDKLEDIHAALNGLL---PSDIRVREISPVPEEFHARFSAKSKIYHYKIYN 110
V P + + + A+N L SD+ V ++ VP +FHARF A+ + Y Y++ +
Sbjct: 120 RPGEVLPPHEPAV--VGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLS 177
Query: 111 D-TIMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRF 169
+ F++ A+H P +L+ M+EA + VG H+FS+F A P++ +
Sbjct: 178 GPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQ--AKSPIRTLDEL 235
Query: 170 DVKEM 174
V E+
Sbjct: 236 SVNEV 240
>Glyma12g28830.1
Length = 529
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 23/185 (12%)
Query: 6 SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHF-------- 57
SG Q Q++ TV +E A + K + + + +SRTDAGVHA V H
Sbjct: 214 SGSQKQLNVRTVVGALEEAFS---KFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKR 270
Query: 58 ----VTPFNYDKLEDIHAALNGLL---PSDIRVREISPVPEEFHARFSAKSKIYHYKIYN 110
V P + + + A+N L SD+ V ++ VP +FHARF A+ + Y Y++ +
Sbjct: 271 RPGEVLPPHEPAV--VGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLS 328
Query: 111 D-TIMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRF 169
+ F++ A+H P +L+ M+EA + VG H+FS+F A P++ +
Sbjct: 329 GPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQ--AKSPIRTLDEL 386
Query: 170 DVKEM 174
V E+
Sbjct: 387 SVNEV 391
>Glyma05g36480.1
Length = 366
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 96/245 (39%), Gaps = 39/245 (15%)
Query: 37 CLVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHAR 96
C V A RTD GV QV F T K DI A+N P RV +S V FH
Sbjct: 114 CAVVAGRTDKGVTGLQQVCSFYTWKKDVKPRDIEDAINHATPGKFRVISVSEVSRVFHPN 173
Query: 97 FSAKSK--IYHYKIYNDTIMDPFQRHFAYHSPYKLN------------------------ 130
FSAK + +Y + + N D + +++ K N
Sbjct: 174 FSAKWRRYLYIFPLTNGRYTDQSNDNGHFYNSCKYNEIHDSASKDELENGKKSYMFSTSK 233
Query: 131 -SAVMREAAQYYVGKHNFSAFANASHNDGVPDP--VKHIFRFDVK-------EMGALLQL 180
+ ++R+ + F+ AS NDG P V H +VK E ++ +
Sbjct: 234 VNRLLRKLEGKLLSYKMFARDTKASRNDGPPTECFVYHARAMEVKPPTTDHGEETKVMCV 293
Query: 181 EVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVS 240
E+ FL + VR + A ++ D + ++ + R+ A A PP GLCLV
Sbjct: 294 ELVADRFLRKMVRVLVATSIREAAAGAEDDALIKLMDATCRRATAPPA---PPDGLCLVD 350
Query: 241 INYNE 245
+ Y E
Sbjct: 351 VGYTE 355