Miyakogusa Predicted Gene

Lj4g3v2225650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2225650.1 tr|B9HZ51|B9HZ51_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568032 PE=4
SV=1,27.27,0.000000000000001,seg,NULL,CUFF.50534.1
         (378 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g08890.1                                                        75   2e-13

>Glyma09g08890.1 
          Length = 240

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 105/246 (42%), Gaps = 67/246 (27%)

Query: 45  GRKFDPKLDDERKKSALYSRIVGYSNGLLLCKKTSRGR---VYHVTNPMTREWTKXXXXX 101
           G  F+P     + +S L   +   SNGLL+     R R   +YH+ NP+T++        
Sbjct: 23  GPNFEPTNIVPQLRSVL-KFVFACSNGLLV-YGNPRPRHRCIYHIRNPLTKD-------- 72

Query: 102 XXXTGHNQRDCVFEGFVCEPFYQVEANNVVTLNSHN------RFRVVRFPWLNDRVFSHT 155
                                  +E    +TL  H        FRVVR P  +D      
Sbjct: 73  ----------------------SLELPCALTLCDHAGVLVGFTFRVVRIPAFSDT----- 105

Query: 156 PKFEFEMVVFSSETGQWCRKTVSCPKGFVQTDILI-HAVAHRGRLYFMGRMDLLVYDPFN 214
            +  F++ VF SETG+W    VSCPKGF     L   +V H G+LYFMG   +LVYDP+ 
Sbjct: 106 -RSAFDVEVFYSETGKWKNFLVSCPKGFACGFFLTASSVEHEGKLYFMGGGRVLVYDPYE 164

Query: 215 NDAHQCCHTIDYPIHSPYPRDLPFTGHVGVSCGNIRIANISCSFDPHVLNTMTVWELEYQ 274
           N+       +   I  P      + G +GVSCG ++            L+  TV+ L++ 
Sbjct: 165 NE------RVASVIELPRGFGEAYRGCLGVSCGTLQ------------LSEDTVF-LKFG 205

Query: 275 DDSSCC 280
           D+  CC
Sbjct: 206 DNIICC 211