Miyakogusa Predicted Gene

Lj4g3v2215050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2215050.1 Non Chatacterized Hit- tr|I1MS46|I1MS46_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=4,52.38,1e-16,
,CUFF.50484.1
         (86 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g17360.2                                                       110   3e-25
Glyma13g17360.1                                                       105   1e-23
Glyma17g05140.1                                                        91   3e-19

>Glyma13g17360.2 
          Length = 82

 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 63/79 (79%)

Query: 8  AVVKVSGDLRTPSSLSFGNSHGRAHDSSLVLATRPSRQALSYWTCSKLCAICFVAGVVFG 67
          AV KVSGDL++ S      +     DSSL+LATRP RQA+SYWTCSKLCA CFVAG VFG
Sbjct: 4  AVSKVSGDLKSSSFDRVREAPPPPPDSSLLLATRPPRQAVSYWTCSKLCAFCFVAGAVFG 63

Query: 68 YTLRGRVKRWASKILRKLS 86
          Y+LRGRVKRWASK+L+KLS
Sbjct: 64 YSLRGRVKRWASKMLKKLS 82


>Glyma13g17360.1 
          Length = 84

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 63/81 (77%), Gaps = 2/81 (2%)

Query: 8  AVVKVSGDLRTPSSLSFGNSHGRAHDSSLVLATRPSR--QALSYWTCSKLCAICFVAGVV 65
          AV KVSGDL++ S      +     DSSL+LATRP R  QA+SYWTCSKLCA CFVAG V
Sbjct: 4  AVSKVSGDLKSSSFDRVREAPPPPPDSSLLLATRPPRHLQAVSYWTCSKLCAFCFVAGAV 63

Query: 66 FGYTLRGRVKRWASKILRKLS 86
          FGY+LRGRVKRWASK+L+KLS
Sbjct: 64 FGYSLRGRVKRWASKMLKKLS 84


>Glyma17g05140.1 
          Length = 128

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 63/105 (60%), Gaps = 27/105 (25%)

Query: 8   AVVKVSGDLRTPSSLSFGNSHGRAHDSSLVLATRPSR----------------------- 44
           AV  VSG+L+ PS L    +     DSSL+LATRP R                       
Sbjct: 25  AVSTVSGELK-PSILDRVRAAPPPPDSSLLLATRPPRHLSPSLSFCFAPNLTLYHFTCSF 83

Query: 45  ---QALSYWTCSKLCAICFVAGVVFGYTLRGRVKRWASKILRKLS 86
              QA+SY TCSKLCAICFVAG +FGY+LRGRVKRWASKIL+KLS
Sbjct: 84  ILGQAVSYLTCSKLCAICFVAGAIFGYSLRGRVKRWASKILKKLS 128