Miyakogusa Predicted Gene

Lj4g3v2180370.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2180370.2 tr|A9RV94|A9RV94_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_161188,37.1,6e-18,RNA_pol_Rpc4,RNA polymerase III Rpc4;
seg,NULL; SUBFAMILY NOT NAMED,NULL; DNA-DIRECTED RNA
POLYMERAS,CUFF.50439.2
         (296 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g05820.1                                                       326   2e-89
Glyma13g16900.1                                                       273   1e-73
Glyma12g00860.1                                                       199   3e-51
Glyma09g36500.1                                                       192   4e-49
Glyma17g05820.2                                                       156   3e-38
Glyma01g44320.1                                                       100   3e-21

>Glyma17g05820.1 
          Length = 298

 Score =  326 bits (836), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 176/303 (58%), Positives = 216/303 (71%), Gaps = 12/303 (3%)

Query: 1   MDLGSSKDAPGGGGRRKVKFAPRAPPRRXXXXXXXXXXXXDTDANVA--KDLLRRLNE-- 56
           M  GS KD PG    RK KF PRAPPRR            D DA  A  ++LL+R NE  
Sbjct: 1   MASGSGKDGPGVP--RKPKFKPRAPPRRVIKQEVKAEVVDDADAEQAAKENLLKRFNERE 58

Query: 57  --GKLRHKVEKKVSGSQIAFGDGGVASSIKSYGFPRGGSSASDGQNSEFNGKPQKEYKEP 114
              K ++KVEKKV  SQIAFG GG ++S+KSYG PRGGSS +   +S  +G  +KEY+EP
Sbjct: 59  SAMKAKYKVEKKVLASQIAFGYGGESTSMKSYGIPRGGSSININLSSASSGGKEKEYQEP 118

Query: 115 WDYYSEYPTTLPLRRPYSGNPEYLDEEEFGEAAESRTYDEDSANSAVELGLLEENPETSM 174
           WDYYS YP TLPLRRPYSGNP  LD+EEF EAA+SRTY+E+++NS ++LGLLEENPE SM
Sbjct: 119 WDYYSNYPVTLPLRRPYSGNPALLDDEEFAEAAQSRTYEENASNSTMDLGLLEENPEASM 178

Query: 175 FLMRLPT-LPIPKQSATAGGKGDNGNNTKRPEGSKDXXXXXXXXXXXXXAGYMGKMVVYK 233
           FL+ LPT LP+ KQSATAG K  N  +     GSK+             +G+MGKM+VYK
Sbjct: 179 FLINLPTKLPMIKQSATAGDKDVNEKSIPH-GGSKN--VEELCELNELSSGFMGKMLVYK 235

Query: 234 SGAVKLKLGDTLYDVSSGMNCSFAQDLVTINTAKKDCCAVGEISKCATITPNVDSLLDSL 293
           SGA+KLKLG+TLYDVSSGMNC+ AQDLV +NTA+K CC +GEISK  TITP+VD+++D+L
Sbjct: 236 SGAIKLKLGNTLYDVSSGMNCACAQDLVAVNTAQKHCCTIGEISKHVTITPDVDAIIDNL 295

Query: 294 AGL 296
           + L
Sbjct: 296 SDL 298


>Glyma13g16900.1 
          Length = 278

 Score =  273 bits (698), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/244 (59%), Positives = 175/244 (71%), Gaps = 18/244 (7%)

Query: 67  VSGSQIAFGDGGVASSIKSYGFPRGGSSASDGQNSEFNGKP------------QKEYKEP 114
           V  SQIAFG GG ++S+KSYG PRGGSS +  Q+S  NG P            +KEY+EP
Sbjct: 39  VLASQIAFGYGGESTSMKSYGIPRGGSSININQSSASNGMPPSIHFHFIDWAKEKEYQEP 98

Query: 115 WDYYSEYPTTLPLRRPYSGNPEYLDEEEFGEAAESRTYDEDSANSAVELGLLEENPETSM 174
           WDY S YP TLPLRRPYSGNP  LD++EFGEAAE R YDE+++NSA+EL LLE NPE SM
Sbjct: 99  WDYDSNYPVTLPLRRPYSGNPALLDDQEFGEAAEPRAYDENASNSAMELDLLEHNPEASM 158

Query: 175 FLMRLPT-LPIPKQSATAGGKGDNGNNTKRPE-GSKDXXXXXXXXXXXXXAGYMGKMVVY 232
           F + LPT LP+ KQSATAG    + N   RP  GSK+             +G+MGKM+VY
Sbjct: 159 FFINLPTKLPMIKQSATAGSS--DVNVKSRPHGGSKN--VEELCELNELSSGFMGKMLVY 214

Query: 233 KSGAVKLKLGDTLYDVSSGMNCSFAQDLVTINTAKKDCCAVGEISKCATITPNVDSLLDS 292
           KSGA+KLKLGDTLYDVSSGM C+ AQDLV INTA+K CC +GEISK  +ITP++D+++D+
Sbjct: 215 KSGAIKLKLGDTLYDVSSGMKCACAQDLVAINTAQKHCCTIGEISKRVSITPDIDAIIDN 274

Query: 293 LAGL 296
           L  L
Sbjct: 275 LPDL 278


>Glyma12g00860.1 
          Length = 345

 Score =  199 bits (506), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/316 (40%), Positives = 168/316 (53%), Gaps = 47/316 (14%)

Query: 11  GGGGRRKVKFAPR-APPRRXXXXXXXXXXXXDTDANVAKDLLRRL-NEGKLRHKVEKKVS 68
           G    RK+KF PR   P R            D+   V + L RR  N  K   KVE K S
Sbjct: 38  GSSKARKLKFKPRNLKPVRTPKTEADDKQKEDS--AVPRALSRRQENPTKREPKVETK-S 94

Query: 69  GSQIAFGDGGVASSIKSYGFP-------------------RGGSSASDGQN--------- 100
             ++AF  G  + S+++YG                     R  S A++ QN         
Sbjct: 95  SVEVAFSLGSSSHSLRTYGISKSVDSGSPSKYFANEQIRSRHSSVATEDQNYACMIEVTD 154

Query: 101 ------SEFNGKPQKEYKEPWDYY-SEYPTTLPLRRPYSGNPEYLDEEEFGEAAESRTYD 153
                      K ++EYKEPWDY  S YPTTLPLR+P SG+PE LDE+EFGEAA S  YD
Sbjct: 155 DDDDTTDASARKIKREYKEPWDYENSYYPTTLPLRKPNSGDPEILDEKEFGEAASSAEYD 214

Query: 154 EDSANSAVELGLLEENPETSMFLMRLPTLPIPKQSATAGGKGDNGNNTKRPEGSKDXXXX 213
           E++ NSA ELGLL+++ +  M   + PTLP+ KQ  T  GK   G +T   E +K     
Sbjct: 215 ENTVNSAAELGLLKKSQQQRMLFFKFPTLPLVKQ--TNKGKEKIGKSTVSQEATKSKSAL 272

Query: 214 XXXXXXXXXAGYMGKMVVYKSGAVKLKLGDTLYDVSSGMNCSFAQDLVTINTAKKDCCAV 273
                     GYMGKM+VYKSGA+KLKLG+T++DVS G N    QD+V +NTA+K CC +
Sbjct: 273 EELPR-----GYMGKMLVYKSGAIKLKLGETMFDVSPGSNSVSVQDIVAVNTAQKQCCNL 327

Query: 274 GEISKCATITPNVDSL 289
           GE+ K   + P++DS+
Sbjct: 328 GELRKRVVVVPDLDSI 343


>Glyma09g36500.1 
          Length = 303

 Score =  192 bits (488), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 167/305 (54%), Gaps = 35/305 (11%)

Query: 11  GGGGRRKVKFAPRAPPRRXXXXXXXXXXXXDTDANVAKDLLRRLNE--GKLRHKVEKKVS 68
           G    RK KF PR   +             + D+ V + L RR +E   K   KVE+K S
Sbjct: 6   GTSKARKPKFKPRNL-KAVRAPKTEADDKRNEDSEVPRALSRRRHENPAKREPKVERK-S 63

Query: 69  GSQIAFGDG----------GVASSIKS----------YGFPRGGSSASDGQNSEFNG--- 105
             ++AF  G          G + SI S          +   +  S A++ QN   N    
Sbjct: 64  SVEVAFSLGSSSSHSLRTYGTSKSIDSGTSSGSPSKYFANEQIRSIATEDQNDASNASAR 123

Query: 106 KPQKEYKEPWDYY-SEYPTTLPLRRPYSGNPEYLDEEEFGEAAESRTYDEDSANSAVELG 164
           K ++EYKEPWDY  S YPTTLPLR+P SG+PE LDE+EFGEAA S  YDE++ NSA EL 
Sbjct: 124 KIKREYKEPWDYENSYYPTTLPLRKPNSGDPEILDEKEFGEAATSVEYDENTVNSAAELE 183

Query: 165 LLEENPETSMFLMRLPTLPIPKQSATAGGKGDNGNNTKRPEGSKDXXXXXXXXXXXXXAG 224
           +LE   E  MF  ++PT P+P    +  GK   G +T   E +K               G
Sbjct: 184 ILESE-EQRMFFFQIPT-PLPMDKQSNKGKEKIGTSTVSGEATKSKNALEELPR-----G 236

Query: 225 YMGKMVVYKSGAVKLKLGDTLYDVSSGMNCSFAQDLVTINTAKKDCCAVGEISKCATITP 284
           YMGKM+VYKSGA+KLKLG+TL DVS G NC   QD++ +NTA+K CC +GEISK   + P
Sbjct: 237 YMGKMLVYKSGAIKLKLGETLLDVSPGSNCRCVQDVMAVNTAQKQCCNLGEISKRVVVVP 296

Query: 285 NVDSL 289
           ++DS+
Sbjct: 297 DLDSI 301


>Glyma17g05820.2 
          Length = 134

 Score =  156 bits (394), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/138 (60%), Positives = 104/138 (75%), Gaps = 6/138 (4%)

Query: 161 VELGLLEENPETSMFLMRLPT-LPIPKQSATAGGKGDNGNNTKRPEG-SKDXXXXXXXXX 218
           ++LGLLEENPE SMFL+ LPT LP+ KQSATAG K  + N    P G SK+         
Sbjct: 1   MDLGLLEENPEASMFLINLPTKLPMIKQSATAGDK--DVNEKSIPHGGSKNVEELCELNE 58

Query: 219 XXXXAGYMGKMVVYKSGAVKLKLGDTLYDVSSGMNCSFAQDLVTINTAKKDCCAVGEISK 278
               +G+MGKM+VYKSGA+KLKLG+TLYDVSSGMNC+ AQDLV +NTA+K CC +GEISK
Sbjct: 59  LS--SGFMGKMLVYKSGAIKLKLGNTLYDVSSGMNCACAQDLVAVNTAQKHCCTIGEISK 116

Query: 279 CATITPNVDSLLDSLAGL 296
             TITP+VD+++D+L+ L
Sbjct: 117 HVTITPDVDAIIDNLSDL 134


>Glyma01g44320.1 
          Length = 190

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 79/138 (57%), Gaps = 23/138 (16%)

Query: 152 YDEDSANSAVELGLLEENPETSMFLMRLPTLPIPKQSATAGGKGDNGNNTKRPEGSKDXX 211
           YDE+S NSA EL +LE++ +  MF  ++P   +P  S  +G           P   KD  
Sbjct: 72  YDENSVNSAAELRILEKSEDQRMFFFKIPAY-LPGTSTVSG----------EPTHLKDLP 120

Query: 212 XXXXXXXXXXXAGYMGKMVVYKSGAVKLKLGDTLYDVSSGMNCSFAQDLVTINTAKKDCC 271
                       GYMGKM+VYKSGA+ LKLG++L+DV  G N    +D+V +NT +K CC
Sbjct: 121 R-----------GYMGKMLVYKSGAINLKLGESLFDVYPGSNRGHVEDVVAVNT-QKQCC 168

Query: 272 AVGEISKCATITPNVDSL 289
            +G+ISK   +TPN+D L
Sbjct: 169 NLGKISKRVNVTPNIDFL 186