Miyakogusa Predicted Gene

Lj4g3v2139570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2139570.1 tr|Q0JAK5|Q0JAK5_ORYSJ OSJNBa0009P12.21 protein
OS=Oryza sativa subsp. japonica GN=Os04g0592700 PE=2,37.41,1e-18,WD40
repeat-like,WD40-repeat-containing domain; no description,WD40/YVTN
repeat-like-containing doma,gene.g56229.t1.1
         (156 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g02240.1                                                       128   2e-30
Glyma17g09690.1                                                       124   3e-29

>Glyma05g02240.1 
          Length = 885

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/140 (50%), Positives = 93/140 (66%), Gaps = 5/140 (3%)

Query: 1   MIACICGDAIKILNSTTKSSITSAPHGYPESPKALSLSPCNRFLYTSA-SREIHAWEVST 59
            IAC CG++IKI++S T ++I S      ES  AL+LSP +R L++S  SR+I  W++ST
Sbjct: 33  FIACACGESIKIVDSAT-AAIRSTLGADSESFTALALSPDDRLLFSSGHSRQIKVWDLST 91

Query: 60  LTRSKNVWKGTKGTVTCMECHPSGKWLATGGDDRKVLIFNVDCDSGTHCKKILVHGAIVS 119
           L   ++ WKG +G V CM CHPSG  LATGG DRKVL+++VD    TH  K   HG +VS
Sbjct: 92  LKCVRS-WKGHEGPVMCMTCHPSGGLLATGGADRKVLVWDVDGGYCTHYFK--GHGGVVS 148

Query: 120 CVMFHPDPDKLLVSQIEEEH 139
           CVMFHPDP+K L   +   H
Sbjct: 149 CVMFHPDPEKQLGRGVNNTH 168


>Glyma17g09690.1 
          Length = 899

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 91/133 (68%), Gaps = 5/133 (3%)

Query: 1   MIACICGDAIKILNSTTKSSITSAPHGYPESPKALSLSPCNRFLYTSA-SREIHAWEVST 59
            IAC CG++IKI++S T ++I S      ES  AL+LSP +R L++S  SR+I  W++ST
Sbjct: 33  FIACACGESIKIVDSAT-AAIRSTLDADSESFTALALSPDDRLLFSSGHSRQIRVWDLST 91

Query: 60  LTRSKNVWKGTKGTVTCMECHPSGKWLATGGDDRKVLIFNVDCDSGTHCKKILVHGAIVS 119
           L   ++ WKG +G V CM CHPSG  LATGG DRKVL+++VD    TH  K   HG +VS
Sbjct: 92  LKCVRS-WKGHEGPVMCMTCHPSGGLLATGGADRKVLVWDVDGGYCTHYFK--GHGGVVS 148

Query: 120 CVMFHPDPDKLLV 132
           CVMFH DP+K L+
Sbjct: 149 CVMFHSDPEKQLL 161