Miyakogusa Predicted Gene

Lj4g3v2120370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2120370.1 tr|I3S2B8|I3S2B8_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2 SV=1,99.42,0,Ribulose
bisphosphate carboxylase, smal,Ribulose bisphosphate carboxylase small
chain, domain; RuBis,CUFF.50254.1
         (173 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g00910.1                                                       303   8e-83
Glyma13g07610.1                                                       195   2e-50
Glyma19g06370.1                                                       194   4e-50
Glyma19g06340.1                                                       194   4e-50
Glyma19g06340.5                                                       189   1e-48
Glyma19g06340.6                                                       173   7e-44
Glyma18g53430.1                                                       122   3e-28
Glyma19g06340.3                                                        91   5e-19
Glyma19g06340.2                                                        91   6e-19
Glyma19g06340.4                                                        91   6e-19
Glyma19g06390.1                                                        84   7e-17
Glyma18g39900.1                                                        79   3e-15
Glyma19g06420.1                                                        74   8e-14
Glyma08g48060.1                                                        61   5e-10
Glyma14g10170.1                                                        54   7e-08

>Glyma13g00910.1 
          Length = 172

 Score =  303 bits (775), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 140/172 (81%), Positives = 149/172 (86%)

Query: 1   MSAGTFTALVAGAGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFE 60
           MSA TF A +AGAGFVGLKSNSSNL P TG   WK K  SNGSKT CMKTWNPINN+KFE
Sbjct: 1   MSAATFAAHIAGAGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFE 60

Query: 61  TLSYLPPLTDESIAKEVDYMLKKGWIPCLEFDELGHIRRENSRMPGYYDGRYWTLWKLPM 120
           TLSYLPPL+DESIAKE+DYMLKKGWIPCLEFDELG +RRENS MPGYYDGRYWTLWKLPM
Sbjct: 61  TLSYLPPLSDESIAKEIDYMLKKGWIPCLEFDELGCVRRENSHMPGYYDGRYWTLWKLPM 120

Query: 121 FGCNDSSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAANTTT 172
           F C+DSSQVL EI EC+R YPNAYIRC+AFDN RHMQSMAFI+ KP   TTT
Sbjct: 121 FACSDSSQVLKEIHECRRVYPNAYIRCLAFDNQRHMQSMAFIVHKPDITTTT 172


>Glyma13g07610.1 
          Length = 178

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 114/161 (70%), Gaps = 7/161 (4%)

Query: 11  AGAG----FVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLP 66
           AGAG    F GLKS +   +P    N   +   SNG +  CM+ W PI  +KFETLSYLP
Sbjct: 17  AGAGMVAPFTGLKSMAG--FPTRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLP 74

Query: 67  PLTDESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCND 125
            L D  +AKEV+Y+L+KGWIPCLEF+ E G + RE++R PGYYDGRYWT+WKLPMFGC D
Sbjct: 75  DLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTD 134

Query: 126 SSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKP 166
           +SQVL E+QE K AYPN +IR I FDN R +Q ++FI  KP
Sbjct: 135 ASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175


>Glyma19g06370.1 
          Length = 178

 Score =  194 bits (493), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 114/161 (70%), Gaps = 7/161 (4%)

Query: 11  AGAG----FVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLP 66
           AGAG    F GLKS +   +P    N   +   SNG +  CM+ W P+  +KFETLSYLP
Sbjct: 17  AGAGMVAPFTGLKSMAG--FPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLP 74

Query: 67  PLTDESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCND 125
            L D  +AKEV+Y+L+KGWIPCLEF+ E G + RE++R PGYYDGRYWT+WKLPMFGC D
Sbjct: 75  DLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTD 134

Query: 126 SSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKP 166
           +SQVL E+QE K AYPN +IR I FDN R +Q ++FI  KP
Sbjct: 135 ASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175


>Glyma19g06340.1 
          Length = 178

 Score =  194 bits (493), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 114/161 (70%), Gaps = 7/161 (4%)

Query: 11  AGAG----FVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLP 66
           AGAG    F GLKS +   +P    N   +   SNG +  CM+ W P+  +KFETLSYLP
Sbjct: 17  AGAGMVAPFTGLKSMAG--FPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLP 74

Query: 67  PLTDESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCND 125
            L D  +AKEV+Y+L+KGWIPCLEF+ E G + RE++R PGYYDGRYWT+WKLPMFGC D
Sbjct: 75  DLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTD 134

Query: 126 SSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKP 166
           +SQVL E+QE K AYPN +IR I FDN R +Q ++FI  KP
Sbjct: 135 ASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175


>Glyma19g06340.5 
          Length = 170

 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 111/156 (71%), Gaps = 7/156 (4%)

Query: 11  AGAG----FVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLP 66
           AGAG    F GLKS +   +P    N   +   SNG +  CM+ W P+  +KFETLSYLP
Sbjct: 17  AGAGMVAPFTGLKSMAG--FPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLP 74

Query: 67  PLTDESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCND 125
            L D  +AKEV+Y+L+KGWIPCLEF+ E G + RE++R PGYYDGRYWT+WKLPMFGC D
Sbjct: 75  DLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTD 134

Query: 126 SSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAF 161
           +SQVL E+QE K AYPN +IR I FDN R +Q ++F
Sbjct: 135 ASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISF 170


>Glyma19g06340.6 
          Length = 123

 Score =  173 bits (439), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 94/122 (77%), Gaps = 1/122 (0%)

Query: 48  MKTWNPINNRKFETLSYLPPLTDESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPG 106
           M  W P+  +KFETLSYLP L D  +AKEV+Y+L+KGWIPCLEF+ E G + RE++R PG
Sbjct: 1   MHVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPG 60

Query: 107 YYDGRYWTLWKLPMFGCNDSSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKP 166
           YYDGRYWT+WKLPMFGC D+SQVL E+QE K AYPN +IR I FDN R +Q ++FI  KP
Sbjct: 61  YYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 120

Query: 167 AA 168
             
Sbjct: 121 PG 122


>Glyma18g53430.1 
          Length = 152

 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 83/146 (56%), Gaps = 16/146 (10%)

Query: 13  AGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDES 72
           A F GLKS +   +PVT  N   +   SN  +  CM+ W P+  +KFETLS+LPP + E 
Sbjct: 21  APFTGLKSMAG--FPVTKTNYDINSIASNSERVQCMQVWPPVGKKKFETLSHLPPFSREQ 78

Query: 73  IAKEVDYMLKKGWIPCLEFDELGHIRRE-NSRMPGYYDGRYWTLWKLPMFGCNDSSQVLN 131
               V           L FD  G++    N R P Y DGRYWT+WKLPM GC DS+QVL 
Sbjct: 79  FMVMV-----------LNFD--GYVWGACNHRSPEYNDGRYWTMWKLPMIGCTDSAQVLK 125

Query: 132 EIQECKRAYPNAYIRCIAFDNHRHMQ 157
            + E  +AYP A++R I FDN R +Q
Sbjct: 126 GVDEAVKAYPTAFVRIIGFDNVRQVQ 151


>Glyma19g06340.3 
          Length = 123

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 7/94 (7%)

Query: 11  AGAG----FVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLP 66
           AGAG    F GLKS +   +P    N   +   SNG +  CM+ W P+  +KFETLSYLP
Sbjct: 17  AGAGMVAPFTGLKSMAG--FPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLP 74

Query: 67  PLTDESIAKEVDYMLKKGWIPCLEFD-ELGHIRR 99
            L D  +AKEV+Y+L+KGWIPCLEF+ E+  I R
Sbjct: 75  DLDDAQLAKEVEYLLRKGWIPCLEFELEVTRILR 108


>Glyma19g06340.2 
          Length = 111

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 6/86 (6%)

Query: 11  AGAG----FVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLP 66
           AGAG    F GLKS +   +P    N   +   SNG +  CM+ W P+  +KFETLSYLP
Sbjct: 17  AGAGMVAPFTGLKSMAG--FPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLP 74

Query: 67  PLTDESIAKEVDYMLKKGWIPCLEFD 92
            L D  +AKEV+Y+L+KGWIPCLEF+
Sbjct: 75  DLDDAQLAKEVEYLLRKGWIPCLEFE 100


>Glyma19g06340.4 
          Length = 142

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 6/86 (6%)

Query: 11  AGAG----FVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLP 66
           AGAG    F GLKS +   +P    N   +   SNG +  CM+ W P+  +KFETLSYLP
Sbjct: 17  AGAGMVAPFTGLKSMAG--FPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLP 74

Query: 67  PLTDESIAKEVDYMLKKGWIPCLEFD 92
            L D  +AKEV+Y+L+KGWIPCLEF+
Sbjct: 75  DLDDAQLAKEVEYLLRKGWIPCLEFE 100


>Glyma19g06390.1 
          Length = 121

 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 63/143 (44%), Gaps = 44/143 (30%)

Query: 13  AGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDES 72
           A F GLKS +    P    N   +   +NG +      W P+  +KF T SYLP L D  
Sbjct: 23  APFTGLKSMAG--IPTRKTNSDITSIATNGGRV-----WPPVGKKKFGTFSYLPDLDDAQ 75

Query: 73  IAKEVDYMLKKGWIPCLEFDELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVLNE 132
           +AKE                                     T+WK PMFGC D+SQVL E
Sbjct: 76  LAKE-------------------------------------TIWKHPMFGCTDASQVLKE 98

Query: 133 IQECKRAYPNAYIRCIAFDNHRH 155
           +QE K  YPN++IR I FDN R 
Sbjct: 99  LQEAKTTYPNSFIRIIGFDNIRQ 121


>Glyma18g39900.1 
          Length = 131

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 63/115 (54%), Gaps = 19/115 (16%)

Query: 6   FTALVAGAGFVGLKSNSSNLYPVTGFNE-WKSKTTSNGSKTLCMKTWNPINNRKFETLSY 64
           FT L + AGF   K+N    Y +T   + WK    +    T+ +K W P   +KFETLSY
Sbjct: 23  FTGLKSMAGFPVRKTN----YDITYHKQHWK---ITMHQHTMQIKVW-PQIGKKFETLSY 74

Query: 65  LPPLTDESIAKEVDYMLKKGWIPCLEFD----ELGHIRRENSRMPGYYDGRYWTL 115
           LPPLT E + KE       GWIPCLEF+      G + REN R PGYYDG Y  L
Sbjct: 75  LPPLTREQLLKE------DGWIPCLEFELESVPKGFVYRENHRSPGYYDGSYQCL 123


>Glyma19g06420.1 
          Length = 123

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 18/124 (14%)

Query: 50  TWNPINNRKFETLSYLPPLTDESIAKEVDYMLKKGWIPCLEFD-----ELGHIRRENSRM 104
            W PI  +KFETLSYLP L D  +AKEV+Y+L+ GWIPCLEF+      L  +      +
Sbjct: 1   VWQPIG-KKFETLSYLPNLDDAQLAKEVEYLLRNGWIPCLEFELEFSLVLFFVSTYFEEI 59

Query: 105 PGYYDGRYWTLWKLPMFGCNDSS-----QVLNEIQEC-------KRAYPNAYIRCIAFDN 152
             ++      L       C  S+      +++  + C       K  YPNA+IR I FDN
Sbjct: 60  IVFHAILMVDLSVCSTVSCTVSTTDHQDTMMDATRPCGSCLCLAKTTYPNAFIRIIGFDN 119

Query: 153 HRHM 156
            R +
Sbjct: 120 VRQV 123


>Glyma08g48060.1 
          Length = 89

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 44/80 (55%), Gaps = 13/80 (16%)

Query: 13 AGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDES 72
          A F GLKS +   +PV   N   +   SN  +      W PI  +KFETLSYLPPLT E 
Sbjct: 21 APFTGLKSMAG--FPVRKTNYDITSIASNTGRV-----WPPIGKKKFETLSYLPPLTREQ 73

Query: 73 IAKEVDYMLKKGWIPCLEFD 92
          + KE       GWIPCLEF+
Sbjct: 74 LLKE------DGWIPCLEFE 87


>Glyma14g10170.1 
          Length = 135

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 41/80 (51%), Gaps = 13/80 (16%)

Query: 13 AGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDES 72
          A F GLKS       + GF   K+K       +   + W  I  +KFET SYLPPLT E 
Sbjct: 21 APFSGLKS-------MAGFPVRKTKYDITSIASNTGRVWPRIGKKKFETPSYLPPLTREQ 73

Query: 73 IAKEVDYMLKKGWIPCLEFD 92
          + KE       GWIPCLEF+
Sbjct: 74 LLKE------DGWIPCLEFE 87