Miyakogusa Predicted Gene

Lj4g3v2014120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2014120.1 tr|A9STJ2|A9STJ2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_83795
,34.01,0.000000000000003,seg,NULL; SUBFAMILY NOT NAMED,NULL;
NUCLEOPORIN NUP43,NULL,CUFF.50097.1
         (179 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g07890.1                                                       185   2e-47
Glyma02g36850.1                                                       161   3e-40

>Glyma17g07890.1 
          Length = 347

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/176 (61%), Positives = 122/176 (69%), Gaps = 8/176 (4%)

Query: 1   MAVTANSETSRIHRFPQYKYIDAVRWLPLVSAFDRXXXXXXXXXXXXXXXIEIHSFKPNP 60
           MA TA      I RFPQ+KY+DAVRWLPL SAFDR               IEIHS  PNP
Sbjct: 1   MAATA------IQRFPQHKYVDAVRWLPLQSAFDRFAVLALFDFDSDASSIEIHSLNPNP 54

Query: 61  LSFEPQSSWTPPSRVSSLKAAQFLQKTVIAASTSSGSLHFLFSDPADATLESEVSVPEGK 120
           LS EP SSW+ PSRVSSLKA+ FLQK +I ASTSSGSLHFLFSD + ATLESEVS+PEG 
Sbjct: 55  LSLEPHSSWSSPSRVSSLKASHFLQKPLIVASTSSGSLHFLFSDSSVATLESEVSIPEGA 114

Query: 121 LHSVPKSCVDLMDGGVECVTAGEDGRVNLVTA--YGVRYRWLWVWSSMVGSEEAGW 174
           LHSVP SCVDL+DGGVECVT GEDG+VNLV      + YR L+  + +V      W
Sbjct: 115 LHSVPASCVDLLDGGVECVTVGEDGKVNLVGIGDSNLNYRRLFDSAGLVSYTAVSW 170


>Glyma02g36850.1 
          Length = 346

 Score =  161 bits (408), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 117/168 (69%), Gaps = 2/168 (1%)

Query: 9   TSRIHRFPQYKYIDAVRWLPLVSAFDRXXXXXXXXXXXXXXXIEIHSFKPNPLSFEPQSS 68
           T+ I RFPQ++Y+DAVRWLPL SAFDR               IEIH+   NP S EP SS
Sbjct: 5   TTAIQRFPQHRYVDAVRWLPLQSAFDRFAVLALFDFDSDASSIEIHALNQNPFSLEPHSS 64

Query: 69  WTPPSRVSSLKAAQFLQKTVIAASTSSGSLHFLFSDPADATLESEVSVPEGKLHSVPKSC 128
           W+ PSRVSSLK + FLQK +I ASTSSGSLHFLFSD +DA+L SEVS+PEG LHS+P SC
Sbjct: 65  WSSPSRVSSLKPSHFLQKPLIVASTSSGSLHFLFSDSSDASLLSEVSLPEGALHSLPASC 124

Query: 129 VDLMDGGVECVTAGEDGRVNLVTA--YGVRYRWLWVWSSMVGSEEAGW 174
           VDLMDGGVECV+ GEDG+VNLV      + YR L+  + +V      W
Sbjct: 125 VDLMDGGVECVSVGEDGKVNLVGIGDSNLNYRRLFDSAGLVSYTAVRW 172