Miyakogusa Predicted Gene

Lj4g3v2003030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2003030.1 tr|A9TWE0|A9TWE0_PHYPA 50S ribosomal protein L35
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAF,63.51,1e-17,rpmI_bact: ribosomal protein L35,Ribosomal
protein L35, non-mitochondrial; RIBOSOMALL35,Ribosomal pr,CUFF.50086.1
         (148 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g36820.1                                                       192   9e-50
Glyma17g07900.1                                                       184   4e-47
Glyma02g36820.2                                                       143   7e-35
Glyma17g07900.2                                                       133   5e-32

>Glyma02g36820.1 
          Length = 147

 Score =  192 bits (488), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 101/128 (78%), Positives = 109/128 (85%), Gaps = 3/128 (2%)

Query: 24  TRLSYASVRLPPSHKTNSVKLSSSACISTPIFQQKLCTVTPPSS---RSLTIVAAKGYKM 80
           TR+SY SVR P  +  NS+KLSSSA IS+PI  QKLCTV  P +   R LTIV+AKGYKM
Sbjct: 20  TRVSYGSVRFPVLNNANSLKLSSSANISSPILHQKLCTVPSPLALRPRPLTIVSAKGYKM 79

Query: 81  KTHKASAKRFRVTGKGKIVRRRAGKQHLLQKKNTKRKLRLSKMHPVNRSDYDNVIGALPY 140
           KTHKASAKRFRVTG+GKIVRRRAGKQHLL KKNTKRK RLSKMH V+RSDYDNVIGALPY
Sbjct: 80  KTHKASAKRFRVTGRGKIVRRRAGKQHLLVKKNTKRKSRLSKMHAVSRSDYDNVIGALPY 139

Query: 141 LKVNRNAT 148
           LKVNRNAT
Sbjct: 140 LKVNRNAT 147


>Glyma17g07900.1 
          Length = 138

 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 99/128 (77%), Positives = 105/128 (82%), Gaps = 5/128 (3%)

Query: 26  LSYASVRLPPSHKTNSVKLSSSACISTPIFQQKLCTVTPPSSRSL-----TIVAAKGYKM 80
           L YASVR P     NS+KLSSSA ISTPI QQKLC++  P   S      TIV+AKGYKM
Sbjct: 11  LPYASVRFPVLSNANSLKLSSSASISTPILQQKLCSLLSPLPLSPRPRPLTIVSAKGYKM 70

Query: 81  KTHKASAKRFRVTGKGKIVRRRAGKQHLLQKKNTKRKLRLSKMHPVNRSDYDNVIGALPY 140
           KTHKASAKRFRVTG+GKIVRRRAGKQHLL KKNTKRK RLSKMH V+RSDYDNVIGALPY
Sbjct: 71  KTHKASAKRFRVTGRGKIVRRRAGKQHLLVKKNTKRKSRLSKMHAVSRSDYDNVIGALPY 130

Query: 141 LKVNRNAT 148
           LKVNRNAT
Sbjct: 131 LKVNRNAT 138


>Glyma02g36820.2 
          Length = 126

 Score =  143 bits (360), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 85/104 (81%), Gaps = 3/104 (2%)

Query: 24  TRLSYASVRLPPSHKTNSVKLSSSACISTPIFQQKLCTVTPPSS---RSLTIVAAKGYKM 80
           TR+SY SVR P  +  NS+KLSSSA IS+PI  QKLCTV  P +   R LTIV+AKGYKM
Sbjct: 20  TRVSYGSVRFPVLNNANSLKLSSSANISSPILHQKLCTVPSPLALRPRPLTIVSAKGYKM 79

Query: 81  KTHKASAKRFRVTGKGKIVRRRAGKQHLLQKKNTKRKLRLSKMH 124
           KTHKASAKRFRVTG+GKIVRRRAGKQHLL KKNTKRK RLSKM 
Sbjct: 80  KTHKASAKRFRVTGRGKIVRRRAGKQHLLVKKNTKRKSRLSKMQ 123


>Glyma17g07900.2 
          Length = 131

 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 81/103 (78%), Gaps = 5/103 (4%)

Query: 26  LSYASVRLPPSHKTNSVKLSSSACISTPIFQQKLCTVTPPSSRSL-----TIVAAKGYKM 80
           L YASVR P     NS+KLSSSA ISTPI QQKLC++  P   S      TIV+AKGYKM
Sbjct: 11  LPYASVRFPVLSNANSLKLSSSASISTPILQQKLCSLLSPLPLSPRPRPLTIVSAKGYKM 70

Query: 81  KTHKASAKRFRVTGKGKIVRRRAGKQHLLQKKNTKRKLRLSKM 123
           KTHKASAKRFRVTG+GKIVRRRAGKQHLL KKNTKRK RLSKM
Sbjct: 71  KTHKASAKRFRVTGRGKIVRRRAGKQHLLVKKNTKRKSRLSKM 113