Miyakogusa Predicted Gene

Lj4g3v2000890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2000890.1 tr|D7U1D4|D7U1D4_VITVI Translation initiation
factor IF-3 OS=Vitis vinifera GN=VIT_11s0037g00520 PE=,69.96,0,no
description,Translation initiation factor 3, N-terminal; no
description,Translation initiation fa,CUFF.50075.1
         (250 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g08010.1                                                       242   2e-64
Glyma02g36710.1                                                       238   6e-63
Glyma04g23550.1                                                       235   4e-62
Glyma06g30870.1                                                       124   1e-28
Glyma01g21000.1                                                        51   1e-06
Glyma10g42900.1                                                        48   8e-06

>Glyma17g08010.1 
          Length = 275

 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/255 (56%), Positives = 169/255 (66%), Gaps = 13/255 (5%)

Query: 1   MAGITSVPFKXXXXXXXXXXXXXXXXXXXXXXARFPLSHNPHSIKFDPLPHPPHAIVTXX 60
           MAGIT+ PFK                         PLS NP+S+KFDP      ++    
Sbjct: 1   MAGITTSPFKLSHFPTLFSSSDSKLFG-------LPLS-NPYSLKFDPSSLSTTSLSYVK 52

Query: 61  XXXXXXXXX-----XDFRKRQAQAESEDEQALDLSKLKSATVRLIDEKQNMVGVVSRSQA 115
                          D R R++    +D++ALDLS L+S TVRLID+ QNMVGVVS   A
Sbjct: 53  ARYYGGGGGPPRSPNDSRFRKSSDSDDDDKALDLSTLRSDTVRLIDQSQNMVGVVSIDDA 112

Query: 116 IQMADDAQLDLVIVSPEADPPVVKIMDYSXXXXXXXXXXXXXXXXSAASRMDLKELKMGY 175
           IQMA+D +LDLVI+SP+ADPPVV+IMDYS                SAA+RMDLKELKMGY
Sbjct: 113 IQMAEDVELDLVILSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAANRMDLKELKMGY 172

Query: 176 NIDQHDYSVRLRAARKFLTDGDKVKVIVNLKGRENEFRNIAIELIKRFQNDVGELGTEEA 235
           NID+HDYSVRL+AA+KFL DG+KVKVIVNLKGRENEFRN+AI LI RFQNDVGELG EE 
Sbjct: 173 NIDEHDYSVRLKAAQKFLKDGNKVKVIVNLKGRENEFRNMAIALITRFQNDVGELGIEET 232

Query: 236 KSFRDRNIFILLVPN 250
           K+FRDRNIFI+LVPN
Sbjct: 233 KNFRDRNIFIILVPN 247


>Glyma02g36710.1 
          Length = 275

 Score =  238 bits (606), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 132/159 (83%)

Query: 92  LKSATVRLIDEKQNMVGVVSRSQAIQMADDAQLDLVIVSPEADPPVVKIMDYSXXXXXXX 151
           L+S TVRLID+ QNMVGVVS   AIQMA+D +LDLVI+SP+ADPPVV+IMDYS       
Sbjct: 89  LRSDTVRLIDQSQNMVGVVSIDDAIQMAEDVELDLVILSPDADPPVVRIMDYSKYRYEQQ 148

Query: 152 XXXXXXXXXSAASRMDLKELKMGYNIDQHDYSVRLRAARKFLTDGDKVKVIVNLKGRENE 211
                    SAA+RMDLKELKMGYNID+HDYSVRL+AA+KFL DGDKVKVIVNLKGRENE
Sbjct: 149 KKKREQQKKSAANRMDLKELKMGYNIDEHDYSVRLKAAQKFLKDGDKVKVIVNLKGRENE 208

Query: 212 FRNIAIELIKRFQNDVGELGTEEAKSFRDRNIFILLVPN 250
           FRN+AI LI RFQNDVGELG EE K+FRDRNIFI+LVPN
Sbjct: 209 FRNMAIGLITRFQNDVGELGIEETKNFRDRNIFIILVPN 247


>Glyma04g23550.1 
          Length = 243

 Score =  235 bits (599), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 139/172 (80%), Gaps = 3/172 (1%)

Query: 81  SEDEQ---ALDLSKLKSATVRLIDEKQNMVGVVSRSQAIQMADDAQLDLVIVSPEADPPV 137
           S DEQ    LD++ L+SA+VRLID  Q MVGVVS++ A QMA D++LDLVIVSP+ADPPV
Sbjct: 42  SNDEQQPLGLDIAALRSASVRLIDGNQIMVGVVSKTLARQMAQDSELDLVIVSPDADPPV 101

Query: 138 VKIMDYSXXXXXXXXXXXXXXXXSAASRMDLKELKMGYNIDQHDYSVRLRAARKFLTDGD 197
           V++MDY+                SAA+RMDLKELKMGYNIDQHDYSVRL+AA+KFL DGD
Sbjct: 102 VRMMDYNKYKYEQQKKKKGQQKRSAANRMDLKELKMGYNIDQHDYSVRLKAAQKFLKDGD 161

Query: 198 KVKVIVNLKGRENEFRNIAIELIKRFQNDVGELGTEEAKSFRDRNIFILLVP 249
           KVKVIVNLKGRE EFRNIAIELIKRFQ+DVGEL TEE KSFRDRN+ I++VP
Sbjct: 162 KVKVIVNLKGRETEFRNIAIELIKRFQSDVGELATEETKSFRDRNMSIVMVP 213


>Glyma06g30870.1 
          Length = 104

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 69/82 (84%), Gaps = 7/82 (8%)

Query: 175 YNIDQHDYSVRLRAARKFLTDGD-------KVKVIVNLKGRENEFRNIAIELIKRFQNDV 227
           YNIDQHDYS+RL+AA++FL D D        VKV+VNLKGRENEFRNIAIELIKRFQ+DV
Sbjct: 1   YNIDQHDYSLRLKAAQRFLKDVDIYYIPNKNVKVVVNLKGRENEFRNIAIELIKRFQSDV 60

Query: 228 GELGTEEAKSFRDRNIFILLVP 249
           GEL TEE KSFRDRNIF ++VP
Sbjct: 61  GELATEETKSFRDRNIFRVMVP 82


>Glyma01g21000.1 
          Length = 119

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 12/99 (12%)

Query: 35  FPLSHNPHSIKFDP--LPHPPHAIVTXXXXXXXXXXX----XDFRKRQAQAESEDEQALD 88
            PLS NP+SIKFDP  L +   + VT                D R R++    +D++AL 
Sbjct: 27  LPLS-NPYSIKFDPSSLSNTSLSYVTARYYGGSGGASPRSPNDPRSRKSFDSDDDDKAL- 84

Query: 89  LSKLKSATVRLIDEKQNMVGVVSRSQAIQMADDAQLDLV 127
                 +T+RLID+ QNMVGVVS   AI+MA+D +LDLV
Sbjct: 85  ----DLSTLRLIDQSQNMVGVVSIDDAIEMAEDVELDLV 119


>Glyma10g42900.1 
          Length = 547

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 82  EDEQALDLS-KLKSATVRLIDEKQNMVGVVSRSQAIQMADDAQLDLVIVSPEADPPVVKI 140
           ED   L L+ K+K+  VRL+ +  +   ++ R +A++ A   +LDLV V   A PPV KI
Sbjct: 74  EDSSELRLNEKIKAPYVRLVADDGHH-SILPRFEALEHAKTLKLDLVEVDKNAKPPVCKI 132

Query: 141 MDYSXXXXXXXXXXXXXXXXSA--ASRMDLKELKMGYNIDQHDYSVRLRAARKFLTDGDK 198
           MD+                  A    R D+KE++     +  D   +    +K +  G +
Sbjct: 133 MDFHKQMYRRQEREKERAKSRAEMTLRKDVKEVRFSEKTEAKDLKNKADMIKKLMEKGYR 192

Query: 199 VKVIVNLKGRENE 211
           VK  V+  G+EN+
Sbjct: 193 VKCKVS--GKENQ 203