Miyakogusa Predicted Gene

Lj4g3v1983310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983310.1 tr|A9TI05|A9TI05_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_145843,47.92,2e-18,no description,Cytochrome c oxidase,
subunit VIb; COX6B,Cytochrome c oxidase, subunit VIb,CUFF.50028.1
         (101 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g36390.2                                                       184   2e-47
Glyma02g36390.1                                                       183   3e-47
Glyma17g08290.1                                                       141   2e-34

>Glyma02g36390.2 
          Length = 101

 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/101 (86%), Positives = 95/101 (94%)

Query: 1   MALEAYAAGNHDKINADVLSKAREACYKARDAFYACLDKESDKKPTEIASVGLIYPAECK 60
           MALEAYAA N DKI+ DVL+KAR++CYKARDAFYACL+KESDKKPTEIASVGL+YP ECK
Sbjct: 1   MALEAYAAANPDKIHTDVLTKARDSCYKARDAFYACLEKESDKKPTEIASVGLLYPLECK 60

Query: 61  RSRDEFVKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRRGV 101
             R+E+VKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRRGV
Sbjct: 61  ECRNEYVKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRRGV 101


>Glyma02g36390.1 
          Length = 114

 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 94/100 (94%)

Query: 1   MALEAYAAGNHDKINADVLSKAREACYKARDAFYACLDKESDKKPTEIASVGLIYPAECK 60
           MALEAYAA N DKI+ DVL+KAR++CYKARDAFYACL+KESDKKPTEIASVGL+YP ECK
Sbjct: 1   MALEAYAAANPDKIHTDVLTKARDSCYKARDAFYACLEKESDKKPTEIASVGLLYPLECK 60

Query: 61  RSRDEFVKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRRG 100
             R+E+VKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRRG
Sbjct: 61  ECRNEYVKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRRG 100


>Glyma17g08290.1 
          Length = 86

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/72 (90%), Positives = 70/72 (97%)

Query: 29  ARDAFYACLDKESDKKPTEIASVGLIYPAECKRSRDEFVKQCRSSWVKHFDRQYCQNKRV 88
           ARDAFYACL+KESDKKPTEIASVGL+YP ECK+ R+E+VKQCRSSWVKHFDRQYCQNKRV
Sbjct: 1   ARDAFYACLEKESDKKPTEIASVGLLYPVECKQCRNEYVKQCRSSWVKHFDRQYCQNKRV 60

Query: 89  QRLLDDKGSRRG 100
           QRLLDDKGSRRG
Sbjct: 61  QRLLDDKGSRRG 72