Miyakogusa Predicted Gene

Lj4g3v1958780.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1958780.2 Non Chatacterized Hit- tr|I3SP13|I3SP13_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,68.68,0,Beta-Casp,Beta-Casp domain; RMMBL,RNA-metabolising
metallo-beta-lactamase; INTEGRATOR COMPLEX SUBUNI,CUFF.49992.2
         (296 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g09380.1                                                       362   e-100
Glyma08g20140.1                                                        80   2e-15
Glyma12g29040.1                                                        77   2e-14

>Glyma02g09380.1 
          Length = 532

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/261 (68%), Positives = 201/261 (77%), Gaps = 34/261 (13%)

Query: 34  VHHFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLM 93
           V  FERSMI+APGPCVLFATPGM+SGGFS+EVFKHWA SENNL++LPGYCV GT+GH+LM
Sbjct: 304 VQKFERSMIDAPGPCVLFATPGMLSGGFSVEVFKHWAVSENNLVSLPGYCVPGTIGHKLM 363

Query: 94  SGKATKVDVDPDTQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMALL 153
           S K  KVD+DP+T+IDVRCQIHQLAFSPHTDSKGIMDLV FLSPKHVILVHGEK KMA L
Sbjct: 364 SDKHDKVDLDPNTKIDVRCQIHQLAFSPHTDSKGIMDLVNFLSPKHVILVHGEKHKMASL 423

Query: 154 KEKIHSELGIPCHDPANHETICISSTPYVKTEASGTFIQNCLNPNFKFQKCSSVDECDST 213
           KEKIHSELGI C+DPAN+ET+ I S  YV  E S TFI++CL+PNF FQKCSSVD C+ST
Sbjct: 424 KEKIHSELGIQCYDPANNETVTIPSANYVYAETSDTFIRSCLSPNFTFQKCSSVDLCNST 483

Query: 214 LTEKNLMPELQVKNCLNPNFKFQKCSSVDECDSTLTEKNLMPELQVKDERVAEGVLVMEK 273
             ++NLMPE                                  LQV+DERVAEGVLV+EK
Sbjct: 484 TVDRNLMPE----------------------------------LQVEDERVAEGVLVLEK 509

Query: 274 TKKAKIVHQDELLLMLGEKKQ 294
            KKAKIVHQDELLLML E+K 
Sbjct: 510 GKKAKIVHQDELLLMLEEQKH 530


>Glyma08g20140.1 
          Length = 688

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 25/236 (10%)

Query: 46  GPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDVDPD 105
           GP V+ A+PG +  G S ++F  W   + N   LPG+ V GT+   +M+ +  +V +   
Sbjct: 327 GPSVVMASPGGLQSGLSRQLFDKWCSDKKNTCVLPGFVVEGTLAKTIMT-EPKEVTLMNG 385

Query: 106 TQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMALLKEKIHSELG--- 162
               +  Q+H ++FS H DS      ++ L+P ++ILVHGE  +M  LK+K+ S+     
Sbjct: 386 LSAPLNMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGEANQMGRLKQKLTSQFADRN 445

Query: 163 IPCHDPANHETI---------------CISSTPYVKTEASGTFIQNCLNPNFKFQKCSSV 207
                P N +++                   TP V    SG  ++      F +Q  +  
Sbjct: 446 TKILTPKNCQSVEMHFNSQKMAKTIGRLAEKTPEVGETVSGLLVKK----GFTYQIMAPD 501

Query: 208 D-ECDSTLTEKNLMPELQVKNCLNPNFKFQKCSSVDE-CDSTLTEKNLMPELQVKD 261
           D    S L+  N+   + V      +F   +   + E  + ++ E++ +PELQV +
Sbjct: 502 DLHVFSQLSTTNITQRITVPYSGAFSFIQHRLKRIYESVEQSVDEESGVPELQVHE 557


>Glyma12g29040.1 
          Length = 689

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 46  GPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDVDPD 105
           GP V+ A+PG +  G S ++F  W   + N   LPGY V GT+   +++ +  +V +   
Sbjct: 328 GPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIIN-EPKEVTLMNG 386

Query: 106 TQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMALLKEKIHSELG 162
               +  Q+H ++FS H DS      ++ L+P ++ILVHGE  +M  LK+K+ S+  
Sbjct: 387 LTAPLNMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGEANEMGRLKQKLISQFA 443