Miyakogusa Predicted Gene

Lj4g3v1958780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1958780.1 Non Chatacterized Hit- tr|C3ZLX0|C3ZLX0_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,39.47,3e-19,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; Beta-Casp,,CUFF.49992.1
         (156 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g09380.1                                                       151   3e-37
Glyma08g20140.1                                                        51   6e-07
Glyma12g29040.1                                                        49   2e-06

>Glyma02g09380.1 
          Length = 532

 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 81/94 (86%), Gaps = 1/94 (1%)

Query: 34  VHHFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLM 93
           V  FERSMI+APGPCVLFATPGM+SGGFS+EVFKHWA SENNL++LPGYCV GT+GH+LM
Sbjct: 304 VQKFERSMIDAPGPCVLFATPGMLSGGFSVEVFKHWAVSENNLVSLPGYCVPGTIGHKLM 363

Query: 94  SGKATKVDVDPDTQIDVRCQVHFISY-PFIYSGG 126
           S K  KVD+DP+T+IDVRCQ+H +++ P   S G
Sbjct: 364 SDKHDKVDLDPNTKIDVRCQIHQLAFSPHTDSKG 397


>Glyma08g20140.1 
          Length = 688

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 46  GPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDVDPD 105
           GP V+ A+PG +  G S ++F  W   + N   LPG+ V GT+   +M+ +  +V +   
Sbjct: 327 GPSVVMASPGGLQSGLSRQLFDKWCSDKKNTCVLPGFVVEGTLAKTIMT-EPKEVTLMNG 385

Query: 106 TQIDVRCQVHFISY 119
               +  QVH+IS+
Sbjct: 386 LSAPLNMQVHYISF 399


>Glyma12g29040.1 
          Length = 689

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 46  GPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDVDPD 105
           GP V+ A+PG +  G S ++F  W   + N   LPGY V GT+   +++ +  +V +   
Sbjct: 328 GPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIIN-EPKEVTLMNG 386

Query: 106 TQIDVRCQVHFISY 119
               +  QVH+IS+
Sbjct: 387 LTAPLNMQVHYISF 400