Miyakogusa Predicted Gene

Lj4g3v1934510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1934510.1 Non Chatacterized Hit- tr|I1MU29|I1MU29_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,95.98,0,SUBFAMILY NOT
NAMED,NULL; ARP2/3 COMPLEX 21 KD SUBUNIT,ARP2/3 complex, p21-Arc
subunit; Arp2/3 compl,CUFF.49975.1
         (174 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g11730.1                                                       322   2e-88
Glyma13g23140.1                                                       318   1e-87

>Glyma17g11730.1 
          Length = 174

 Score =  322 bits (824), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/174 (90%), Positives = 162/174 (93%)

Query: 1   MVYHSSFVDEDGVNKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFV+EDGV++ACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVYHSSFVNEDGVSRACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGESXXXXXXXXXX 120
           IKSPADKLLIYLTFYINVALKRLEG RTLAEGTKAIINLGLEKVPVPGES          
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFPGLFPL 120

Query: 121 XQSHKEAELFRNYLKQIREETSGRLLNVAYRPNGTPNKWWLAFAKRKFMNIIIP 174
            QSHKEAELFRNYLKQIREETSGRLL+VAYRPNGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSHKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIIP 174


>Glyma13g23140.1 
          Length = 174

 Score =  318 bits (816), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/174 (90%), Positives = 161/174 (92%)

Query: 1   MVYHSSFVDEDGVNKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFV+EDGV++ACGC LLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVYHSSFVNEDGVSRACGCSLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGESXXXXXXXXXX 120
           IKSPADKLLIYLTFYINVALKRLEG RTLAEGTKAIINLGLEKVPVPGES          
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFPGLFPL 120

Query: 121 XQSHKEAELFRNYLKQIREETSGRLLNVAYRPNGTPNKWWLAFAKRKFMNIIIP 174
            QSHKEAELFRNYLKQIREETSGRLL+VAYRPNGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSHKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIIP 174