Miyakogusa Predicted Gene

Lj4g3v1932130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1932130.1 tr|A0C9X9|A0C9X9_PARTE Chromosome undetermined
scaffold_16, whole genome shotgun sequence
OS=Paramec,29.73,0.00000000000004,ATG_C,Autophagy-related, C-terminal;
GB DEF: VPS13-LIKE PROTEIN,NULL; VACUOLAR PROTEIN
SORTING-ASSOC,NODE_56425_length_416_cov_67.653847.path2.1
         (136 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g24310.1                                                       251   2e-67
Glyma13g24310.3                                                       150   3e-37
Glyma13g24310.2                                                       150   3e-37

>Glyma13g24310.1 
          Length = 2549

 Score =  251 bits (640), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 124/135 (91%), Positives = 131/135 (97%)

Query: 1    MQSPTGLIMGMAQGTTSLLSNTLYAISDATSQFSKAARKGIVAFTYDDQAVSRVEKHQAT 60
            ++SPTGLIMGMAQGTTSLLSNT+YAISDA SQFSKAARKGIVAFTYDDQAVSR+EKHQA 
Sbjct: 2219 VRSPTGLIMGMAQGTTSLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAI 2278

Query: 61   VSSDSKGVINEVLEGLTGLLQSPIRGAERHGLPGVLSGVALGITGLVAKPAASILEVTGK 120
            V+SDSKGVINEVLEGLTGLLQ P+ GAERHGLPGVLSGVALGITGLVAKPAASILEVTGK
Sbjct: 2279 VASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAASILEVTGK 2338

Query: 121  TALSIRNRSKPNQLR 135
            TALSIRNRSKP+QLR
Sbjct: 2339 TALSIRNRSKPSQLR 2353


>Glyma13g24310.3 
          Length = 272

 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 79/82 (96%)

Query: 54  VEKHQATVSSDSKGVINEVLEGLTGLLQSPIRGAERHGLPGVLSGVALGITGLVAKPAAS 113
           +EKHQA V+SDSKGVINEVLEGLTGLLQ P+ GAERHGLPGVLSGVALGITGLVAKPAAS
Sbjct: 1   MEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAAS 60

Query: 114 ILEVTGKTALSIRNRSKPNQLR 135
           ILEVTGKTALSIRNRSKP+QLR
Sbjct: 61  ILEVTGKTALSIRNRSKPSQLR 82


>Glyma13g24310.2 
          Length = 278

 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 79/82 (96%)

Query: 54  VEKHQATVSSDSKGVINEVLEGLTGLLQSPIRGAERHGLPGVLSGVALGITGLVAKPAAS 113
           +EKHQA V+SDSKGVINEVLEGLTGLLQ P+ GAERHGLPGVLSGVALGITGLVAKPAAS
Sbjct: 1   MEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSGVALGITGLVAKPAAS 60

Query: 114 ILEVTGKTALSIRNRSKPNQLR 135
           ILEVTGKTALSIRNRSKP+QLR
Sbjct: 61  ILEVTGKTALSIRNRSKPSQLR 82