Miyakogusa Predicted Gene

Lj4g3v1920940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1920940.1 Non Chatacterized Hit- tr|Q84S69|Q84S69_ORYSJ
Putative uncharacterized protein P0458H05.117 OS=Oryza,42.2,2e-16,no
description,Armadillo-like helical; seg,NULL; ARM
repeat,Armadillo-type fold,CUFF.49959.1
         (206 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g06940.1                                                       198   3e-51

>Glyma04g06940.1 
          Length = 300

 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 139/189 (73%), Gaps = 1/189 (0%)

Query: 18  QPVREHAGMAIAALIRFNKDVFVGQVLMGPTVRALVSMASVDSLDVLCSLVKSIRSPFVD 77
           + V+E A M IAAL++FNK+VFVG VLMGPT++AL++MAS  S+ VL SL++ IRSP VD
Sbjct: 113 ERVKEEAAMTIAALVKFNKNVFVGLVLMGPTIKALIAMASGCSVRVLSSLIRFIRSPLVD 172

Query: 78  EIESNGEIPKIIALLGSDDLQLTVLAVEVVLEIGYFGRKEAIEAMMKEGVVEKLVELQRL 137
           EI  +GEIPKI+  L S DL L V A++ VLE+GY GR+E +EAM+K G+VE L++LQR 
Sbjct: 173 EILCSGEIPKIVGFLRSRDLGLRVAALDCVLELGYIGRREVVEAMLKIGLVEILMDLQR- 231

Query: 138 EVEGGGGGMRHPFASCVAMFAVQLDVGEGLRQREKRALKPEILERVRKASLSDAESATIV 197
           E           F  CV+ FA+Q++VGEGL   EKR +K EIL  V++AS S+AE AT+ 
Sbjct: 232 EEGCCESDCDFAFECCVSRFAIQVEVGEGLSGEEKREVKSEILRIVKEASKSEAEFATVS 291

Query: 198 AEVLWGSSP 206
           AE+LWGSSP
Sbjct: 292 AEILWGSSP 300