Miyakogusa Predicted Gene

Lj4g3v1881820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1881820.1 tr|G7JFC5|G7JFC5_MEDTR Telomere-associated
protein RIF1 OS=Medicago truncatula GN=MTR_4g115340 PE=4 ,74.59,0,ARM
repeat,Armadillo-type fold; seg,NULL; TELOMERE-ASSOCIATED PROTEIN
(RIF1),NULL; Rif1_N,Rap1-inter,CUFF.49900.1
         (1025 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g11960.1                                                       183   7e-46
Glyma13g22900.1                                                       146   1e-34

>Glyma17g11960.1 
          Length = 214

 Score =  183 bits (465), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/104 (84%), Positives = 95/104 (91%)

Query: 905  AMQDERTSDQLGLLWTEILNSLRRSQPPINFGSSLLRLHEPLFEKTLDHSCPSISEPTIN 964
             MQDERT+DQL LLWTEIL+ LRRS+PP+NFGS+LL+LHEPLFEKTLDH  PSISEPTIN
Sbjct: 2    GMQDERTNDQLQLLWTEILSCLRRSKPPVNFGSALLKLHEPLFEKTLDHPYPSISEPTIN 61

Query: 965  FWNSTFAQQIILDFPPSLLHVLDKLSRNGKLKLQKRSLPSLQKC 1008
            FWNSTF QQIILDFP SLL VLDKLSRNG+LKLQKRSLP LQKC
Sbjct: 62   FWNSTFGQQIILDFPSSLLCVLDKLSRNGRLKLQKRSLPCLQKC 105


>Glyma13g22900.1 
          Length = 188

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 82/97 (84%), Gaps = 1/97 (1%)

Query: 912  SDQLGLLWTEILNSLRRSQPPINFGSSLLRLHEPLFEKTLDHSCPSISEPTINFWNSTFA 971
            +DQL LLWTEIL S  RSQ  IN GS+L +LHEPLF+KTLDH  PSISEPTINFWN TF 
Sbjct: 2    NDQLQLLWTEIL-SCSRSQLSINIGSALPKLHEPLFKKTLDHPYPSISEPTINFWNCTFG 60

Query: 972  QQIILDFPPSLLHVLDKLSRNGKLKLQKRSLPSLQKC 1008
            QQIILDFP SLL VLDKLSRNG+LKLQKRSLP LQKC
Sbjct: 61   QQIILDFPSSLLCVLDKLSRNGRLKLQKRSLPCLQKC 97