Miyakogusa Predicted Gene

Lj4g3v1876880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1876880.1 tr|A9T2C9|A9T2C9_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,54.55,0.011,seg,NULL,
NODE_48014_length_844_cov_46.382702.path2.1
         (86 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g12470.1                                                       117   3e-27
Glyma13g23730.1                                                       116   5e-27

>Glyma17g12470.1 
          Length = 194

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 59/74 (79%)

Query: 13 MRQRHSQGYGSSGDDLEDDACXXXXXXXXXXXXXXTWIEMLENFLWLASAAFVLYYGDQH 72
          MRQRHSQGY SSGDDLEDDAC              TWIEMLENFLWLASAAF+LY+GDQH
Sbjct: 13 MRQRHSQGYASSGDDLEDDACSRHRPFLAPSPPPRTWIEMLENFLWLASAAFILYFGDQH 72

Query: 73 SNMIYLLCYDDRIR 86
          SN+IYLLC+D+RIR
Sbjct: 73 SNLIYLLCHDNRIR 86


>Glyma13g23730.1 
          Length = 194

 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 59/74 (79%)

Query: 13 MRQRHSQGYGSSGDDLEDDACXXXXXXXXXXXXXXTWIEMLENFLWLASAAFVLYYGDQH 72
          MRQRHSQGY SSGDDLEDDAC              TWIEMLENFLWLASAAF+LY+GDQH
Sbjct: 13 MRQRHSQGYASSGDDLEDDACSRHRPFLAPSPPPRTWIEMLENFLWLASAAFILYFGDQH 72

Query: 73 SNMIYLLCYDDRIR 86
          SN+IYLLC+D+RI+
Sbjct: 73 SNLIYLLCHDNRIK 86