Miyakogusa Predicted Gene
- Lj4g3v1813520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1813520.1 Non Chatacterized Hit- tr|I3T6H9|I3T6H9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RING/U-box,NULL; The RING-variant domain is a C4HC3
zinc-fing,Zinc finger, RING-CH-type; no
descript,NODE_46722_length_892_cov_103.239914.path2.1
(253 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma05g08220.2 377 e-105
Glyma05g08220.1 377 e-105
Glyma17g12750.4 375 e-104
Glyma17g12750.3 375 e-104
Glyma17g12750.2 375 e-104
Glyma17g12750.1 375 e-104
Glyma18g02420.1 137 8e-33
Glyma11g36020.1 137 2e-32
Glyma05g31600.1 129 4e-30
Glyma15g00320.2 119 4e-27
Glyma15g00320.1 119 4e-27
Glyma13g45010.1 119 4e-27
Glyma15g00320.3 112 4e-25
Glyma08g14820.1 64 2e-10
>Glyma05g08220.2
Length = 309
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/255 (74%), Positives = 197/255 (77%), Gaps = 2/255 (0%)
Query: 1 MKGEVQLQPPPIMQNXXXXXXXXXXXXXXXXX-XXXAEIKDEE-DVEAGSLPCCRICLES 58
MKGEVQLQPP +MQN EIK+EE DVEAG LPCCRICLES
Sbjct: 1 MKGEVQLQPPAVMQNPSDSDPLLHNQEEEDGSPGSSGEIKNEEEDVEAGLLPCCRICLES 60
Query: 59 DSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYEDNSW 118
DSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVES+EDNSW
Sbjct: 61 DSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSW 120
Query: 119 RKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIPFY 178
RKIKFRLFVARDVFLVF+AVQTVIAAIGGF+YIMDKDG+FRNSFDDGWDRILS+HPIPFY
Sbjct: 121 RKIKFRLFVARDVFLVFLAVQTVIAAIGGFSYIMDKDGSFRNSFDDGWDRILSRHPIPFY 180
Query: 179 YCIXXXXXXXXXXXXXXXXHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACXXXXXX 238
YCI HCSSLNSNDPRMAGCQNCCYGWGILDCFPAS+EAC
Sbjct: 181 YCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVV 240
Query: 239 XXXXXXXXXXXYGFL 253
YGFL
Sbjct: 241 FVVIFAILGIAYGFL 255
>Glyma05g08220.1
Length = 309
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/255 (74%), Positives = 197/255 (77%), Gaps = 2/255 (0%)
Query: 1 MKGEVQLQPPPIMQNXXXXXXXXXXXXXXXXX-XXXAEIKDEE-DVEAGSLPCCRICLES 58
MKGEVQLQPP +MQN EIK+EE DVEAG LPCCRICLES
Sbjct: 1 MKGEVQLQPPAVMQNPSDSDPLLHNQEEEDGSPGSSGEIKNEEEDVEAGLLPCCRICLES 60
Query: 59 DSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYEDNSW 118
DSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVES+EDNSW
Sbjct: 61 DSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSW 120
Query: 119 RKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIPFY 178
RKIKFRLFVARDVFLVF+AVQTVIAAIGGF+YIMDKDG+FRNSFDDGWDRILS+HPIPFY
Sbjct: 121 RKIKFRLFVARDVFLVFLAVQTVIAAIGGFSYIMDKDGSFRNSFDDGWDRILSRHPIPFY 180
Query: 179 YCIXXXXXXXXXXXXXXXXHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACXXXXXX 238
YCI HCSSLNSNDPRMAGCQNCCYGWGILDCFPAS+EAC
Sbjct: 181 YCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVV 240
Query: 239 XXXXXXXXXXXYGFL 253
YGFL
Sbjct: 241 FVVIFAILGIAYGFL 255
>Glyma17g12750.4
Length = 311
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/257 (73%), Positives = 196/257 (76%), Gaps = 4/257 (1%)
Query: 1 MKGEVQLQPPPIMQNXXXX---XXXXXXXXXXXXXXXXAEIKDEE-DVEAGSLPCCRICL 56
MKGEVQLQPP +MQN EIK+EE DVEAG LPCCRICL
Sbjct: 1 MKGEVQLQPPAVMQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPCCRICL 60
Query: 57 ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYEDN 116
ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVES EDN
Sbjct: 61 ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDN 120
Query: 117 SWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIP 176
+WRKIKFRLFVARDVFLVF+AVQTVIAAIGGFAYIMDKDG+FRNSFDDGWDRILS+HPIP
Sbjct: 121 TWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGSFRNSFDDGWDRILSRHPIP 180
Query: 177 FYYCIXXXXXXXXXXXXXXXXHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACXXXX 236
FYYCI HCSSLNSNDPRMAGCQNCCYGWGILDCFPAS+EAC
Sbjct: 181 FYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALV 240
Query: 237 XXXXXXXXXXXXXYGFL 253
YGFL
Sbjct: 241 VVFVVIFAILGIAYGFL 257
>Glyma17g12750.3
Length = 311
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/257 (73%), Positives = 196/257 (76%), Gaps = 4/257 (1%)
Query: 1 MKGEVQLQPPPIMQNXXXX---XXXXXXXXXXXXXXXXAEIKDEE-DVEAGSLPCCRICL 56
MKGEVQLQPP +MQN EIK+EE DVEAG LPCCRICL
Sbjct: 1 MKGEVQLQPPAVMQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPCCRICL 60
Query: 57 ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYEDN 116
ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVES EDN
Sbjct: 61 ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDN 120
Query: 117 SWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIP 176
+WRKIKFRLFVARDVFLVF+AVQTVIAAIGGFAYIMDKDG+FRNSFDDGWDRILS+HPIP
Sbjct: 121 TWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGSFRNSFDDGWDRILSRHPIP 180
Query: 177 FYYCIXXXXXXXXXXXXXXXXHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACXXXX 236
FYYCI HCSSLNSNDPRMAGCQNCCYGWGILDCFPAS+EAC
Sbjct: 181 FYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALV 240
Query: 237 XXXXXXXXXXXXXYGFL 253
YGFL
Sbjct: 241 VVFVVIFAILGIAYGFL 257
>Glyma17g12750.2
Length = 311
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/257 (73%), Positives = 196/257 (76%), Gaps = 4/257 (1%)
Query: 1 MKGEVQLQPPPIMQNXXXX---XXXXXXXXXXXXXXXXAEIKDEE-DVEAGSLPCCRICL 56
MKGEVQLQPP +MQN EIK+EE DVEAG LPCCRICL
Sbjct: 1 MKGEVQLQPPAVMQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPCCRICL 60
Query: 57 ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYEDN 116
ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVES EDN
Sbjct: 61 ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDN 120
Query: 117 SWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIP 176
+WRKIKFRLFVARDVFLVF+AVQTVIAAIGGFAYIMDKDG+FRNSFDDGWDRILS+HPIP
Sbjct: 121 TWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGSFRNSFDDGWDRILSRHPIP 180
Query: 177 FYYCIXXXXXXXXXXXXXXXXHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACXXXX 236
FYYCI HCSSLNSNDPRMAGCQNCCYGWGILDCFPAS+EAC
Sbjct: 181 FYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALV 240
Query: 237 XXXXXXXXXXXXXYGFL 253
YGFL
Sbjct: 241 VVFVVIFAILGIAYGFL 257
>Glyma17g12750.1
Length = 311
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/257 (73%), Positives = 196/257 (76%), Gaps = 4/257 (1%)
Query: 1 MKGEVQLQPPPIMQNXXXX---XXXXXXXXXXXXXXXXAEIKDEE-DVEAGSLPCCRICL 56
MKGEVQLQPP +MQN EIK+EE DVEAG LPCCRICL
Sbjct: 1 MKGEVQLQPPAVMQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPCCRICL 60
Query: 57 ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYEDN 116
ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVES EDN
Sbjct: 61 ESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDN 120
Query: 117 SWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIP 176
+WRKIKFRLFVARDVFLVF+AVQTVIAAIGGFAYIMDKDG+FRNSFDDGWDRILS+HPIP
Sbjct: 121 TWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGSFRNSFDDGWDRILSRHPIP 180
Query: 177 FYYCIXXXXXXXXXXXXXXXXHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACXXXX 236
FYYCI HCSSLNSNDPRMAGCQNCCYGWGILDCFPAS+EAC
Sbjct: 181 FYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALV 240
Query: 237 XXXXXXXXXXXXXYGFL 253
YGFL
Sbjct: 241 VVFVVIFAILGIAYGFL 257
>Glyma18g02420.1
Length = 323
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 91/142 (64%), Gaps = 10/142 (7%)
Query: 40 DEEDVEAGSLPC--CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFS 97
E D+EAG CRICLE+D + I+PC CKGT ++VHR CLDHWR++KEGFAF+
Sbjct: 20 SEIDLEAGPSEQIQCRICLETDGR---DFIAPCKCKGTSKYVHRECLDHWRAIKEGFAFA 76
Query: 98 HCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGT 157
HCTTCKA +HLRV D WR +KFR FV RD+ +F++VQ VIA++ Y++D
Sbjct: 77 HCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLSVQLVIASLAYLVYLIDGYQQ 136
Query: 158 FRNSFDDGWDRILSKHPIPFYY 179
+ G+D +S FYY
Sbjct: 137 YWLRLLWGFDSEMS-----FYY 153
>Glyma11g36020.1
Length = 323
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 91/142 (64%), Gaps = 10/142 (7%)
Query: 40 DEEDVEAGSLPC--CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFS 97
E D+EAG CRICLE+D + I+PC CKGT ++VHR CLDHWR++KEGFAF+
Sbjct: 20 SEIDLEAGPSEQIQCRICLETDGR---DFIAPCKCKGTSKYVHRECLDHWRAIKEGFAFA 76
Query: 98 HCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGT 157
HCTTCKA +HLRV D WR +KFR FV RD+ +F++VQ VIA++ Y++D
Sbjct: 77 HCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDMLFIFLSVQLVIASLSYLVYLIDGYQQ 136
Query: 158 FRNSFDDGWDRILSKHPIPFYY 179
+ G+D +S FYY
Sbjct: 137 YWLRLLWGFDSEMS-----FYY 153
>Glyma05g31600.1
Length = 324
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 82/130 (63%), Gaps = 13/130 (10%)
Query: 52 CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE 111
CRICLE+D I PC CKGT ++VHR CLDHWR+VKEGFAF+HCTTCKA +HLRV
Sbjct: 30 CRICLETDGR---NFIVPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVH 86
Query: 112 SYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRIL- 170
WR KFR FV RD+ L+F+AVQ VIA++ Y +D ++ W R++
Sbjct: 87 G-AYRQWRTFKFRFFVTRDILLIFLAVQLVIASLAYLVYQID-------GYEKYWLRLVW 138
Query: 171 -SKHPIPFYY 179
+ FYY
Sbjct: 139 GFGSELSFYY 148
>Glyma15g00320.2
Length = 257
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 10/129 (7%)
Query: 50 PCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLR 109
P CRICL+ + +LI+PC CKGTQ++VHRSCLD+WRS KEGFAFSHCT C+A F LR
Sbjct: 68 PQCRICLDIGGE---DLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILR 124
Query: 110 VESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRI 169
D W ++KF+ VARD +F+ VQ V+A +G Y D R F G++
Sbjct: 125 ANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGD-ELREMF--GYE-- 179
Query: 170 LSKHPIPFY 178
+HP FY
Sbjct: 180 --EHPYGFY 186
>Glyma15g00320.1
Length = 257
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 10/129 (7%)
Query: 50 PCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLR 109
P CRICL+ + +LI+PC CKGTQ++VHRSCLD+WRS KEGFAFSHCT C+A F LR
Sbjct: 68 PQCRICLDIGGE---DLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILR 124
Query: 110 VESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRI 169
D W ++KF+ VARD +F+ VQ V+A +G Y D R F G++
Sbjct: 125 ANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGD-ELREMF--GYE-- 179
Query: 170 LSKHPIPFY 178
+HP FY
Sbjct: 180 --EHPYGFY 186
>Glyma13g45010.1
Length = 259
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 10/129 (7%)
Query: 50 PCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLR 109
P CRICL+ + +LI+PC CKGTQ++VHRSCLD+WRS KEGFAFSHCT C+A F LR
Sbjct: 70 PQCRICLDIGGE---DLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILR 126
Query: 110 VESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRI 169
D W ++KF+ VARD +F+ VQ V+A +G Y D R F G++
Sbjct: 127 ANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGD-ELREMF--GYE-- 181
Query: 170 LSKHPIPFY 178
+HP FY
Sbjct: 182 --EHPYGFY 188
>Glyma15g00320.3
Length = 256
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 11/129 (8%)
Query: 50 PCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLR 109
P CRICL+ + +LI+PC CKGTQ++VHRSCLD+WRS K GFAFSHCT C+A F LR
Sbjct: 68 PQCRICLDIGGE---DLIAPCHCKGTQKYVHRSCLDNWRSTK-GFAFSHCTECRAVFILR 123
Query: 110 VESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRI 169
D W ++KF+ VARD +F+ VQ V+A +G Y D R F G++
Sbjct: 124 ANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGD-ELREMF--GYE-- 178
Query: 170 LSKHPIPFY 178
+HP FY
Sbjct: 179 --EHPYGFY 185
>Glyma08g14820.1
Length = 76
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 8/67 (11%)
Query: 90 VKEGFAFSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTV-------I 142
++EGFAF+HCTTCKA +HL V S WR K R FV RD+ +F+ VQ V +
Sbjct: 1 LQEGFAFAHCTTCKAPYHLSVHSAY-RQWRTFKLRFFVTRDILFIFLVVQHVDGYEQYWL 59
Query: 143 AAIGGFA 149
+GGF
Sbjct: 60 RLVGGFG 66