Miyakogusa Predicted Gene

Lj4g3v1683110.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1683110.1 tr|B9N4D1|B9N4D1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_784467 PE=4
SV=1,50.5,0.000000000000009,seg,NULL; DUF827,Protein of unknown
function DUF827, plant; coiled-coil,NULL,CUFF.49576.1
         (457 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g11150.1                                                       249   6e-66

>Glyma17g11150.1 
          Length = 315

 Score =  249 bits (635), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 158/313 (50%), Positives = 205/313 (65%), Gaps = 21/313 (6%)

Query: 103 RTYKDELESKKKKIADLHLETAMFQDQLSHVLSELKATQRELLKKDTEIVAARDSXXXXX 162
           +  KDELESK K++AD +LETA  +DQLSHVLSELKATQRELL K+T++VAARD      
Sbjct: 2   KALKDELESKVKEMADQNLETAKVRDQLSHVLSELKATQRELLNKETKLVAARDLELNAL 61

Query: 163 XXXXXXXXXXXXXXXXXXXXXXXXXXXNEVIHRSKLAAIVNEEEMFAIVSERDQKIESAT 222
                                      NEVI+ SKLAAI  E+E  AI+SE+D+KIE AT
Sbjct: 62  KNAKQMESALEAEKEQKEELLQQVKELNEVIYDSKLAAIEFEKEKLAILSEKDEKIELAT 121

Query: 223 KATAQLQQQVEDMKEHIKMLKQ-DNEALFSTKVSGSNSIN----NLNIDMELKERQIMEQ 277
           KATAQL+QQ++DM++H++ML+   N+ +  + + GS  +     N  + MELKER+ M+Q
Sbjct: 122 KATAQLEQQLKDMRKHVEMLQGLQNQPMDKSTLVGSLPLEPMQANETLVMELKERKTMDQ 181

Query: 278 SVYIEKLEMELNQLKKELSSAKEEMNGLNISNESFTSEL----KAINGR---DVGAQVEI 330
           SVYIE+LEMEL++LK+EL+ AKEE N LNI+ ES  SEL     A+N     D+ AQVEI
Sbjct: 182 SVYIERLEMELSKLKQELTIAKEERNSLNITTESLKSELHETKAALNMNKESDIEAQVEI 241

Query: 331 ALLKSQLQEQRFAYKNGCDDDIQT---------EKAIQVENQFEISFMKKELENASAKIA 381
           ALLKSQLQE R A+KNG   ++           E+  +V    E++ MK+ELENA  KI+
Sbjct: 242 ALLKSQLQEHRLAHKNGHVTEVSKADRSKAEAEEQNREVGRFSELALMKRELENALVKIS 301

Query: 382 EFRARAEQAISRA 394
           E RARAEQA+SRA
Sbjct: 302 ELRARAEQALSRA 314