Miyakogusa Predicted Gene

Lj4g3v1660960.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1660960.2 tr|Q3EAN6|Q3EAN6_ARATH HNH endonuclease
OS=Arabidopsis thaliana GN=At3g47490 PE=4
SV=1,55.22,0.00000000000003,HNH,HNH endonuclease,CUFF.49560.2
         (163 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g11120.1                                                       282   9e-77
Glyma05g00790.1                                                       282   1e-76
Glyma17g10930.1                                                       135   2e-32

>Glyma17g11120.1 
          Length = 162

 Score =  282 bits (722), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 144/162 (88%), Gaps = 2/162 (1%)

Query: 2   SSSPHRPRGDGNGENRPRSFDSKTKTICWTKADVVPGRHPDRWRKDAAGNIVCKRFFNCL 61
           SSSP R RGDG  E RPR FDS  K ICW KAD VPGRHP+RWRKDAAGN+VCKRFFNC+
Sbjct: 3   SSSPQRSRGDG--EKRPRFFDSNAKAICWGKADTVPGRHPERWRKDAAGNVVCKRFFNCI 60

Query: 62  GCLCYEYDHIVPFSKGGESTAENCQILQSRVNRFKSDKSQIDSEELKGYSCDVNFTDKEL 121
           GCLCYEYDHI+PFSKGGESTA+NCQILQSRVNRFKSDK  IDSE+LK YSC+VNFTDKEL
Sbjct: 61  GCLCYEYDHIIPFSKGGESTADNCQILQSRVNRFKSDKYNIDSEQLKDYSCEVNFTDKEL 120

Query: 122 DVIEMAVYGDVIRPGNQCRCRTVAEMLGKYKLKDKTDACKLP 163
           D+IEMAVYGDV RPGNQCRCRT+AE LGK+K KD TDACKLP
Sbjct: 121 DIIEMAVYGDVKRPGNQCRCRTIAEKLGKFKPKDDTDACKLP 162


>Glyma05g00790.1 
          Length = 162

 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 145/162 (89%), Gaps = 2/162 (1%)

Query: 2   SSSPHRPRGDGNGENRPRSFDSKTKTICWTKADVVPGRHPDRWRKDAAGNIVCKRFFNCL 61
           SSSP R RGDG  E RPR FDS  K ICW+KAD VPGRHP+RWRKDAAGN+VCKRFFNC+
Sbjct: 3   SSSPQRSRGDG--EKRPRFFDSNAKAICWSKADTVPGRHPERWRKDAAGNVVCKRFFNCI 60

Query: 62  GCLCYEYDHIVPFSKGGESTAENCQILQSRVNRFKSDKSQIDSEELKGYSCDVNFTDKEL 121
           GCLCYEYDHI+PFSKGGESTA+NCQILQSRVNR KSDK  IDS++LK YSC+VNFTDKEL
Sbjct: 61  GCLCYEYDHIIPFSKGGESTADNCQILQSRVNRLKSDKYNIDSDQLKDYSCEVNFTDKEL 120

Query: 122 DVIEMAVYGDVIRPGNQCRCRTVAEMLGKYKLKDKTDACKLP 163
           D+IEMAVYGDV+RPGNQCRCRT+AE LGK+K KD TDACKLP
Sbjct: 121 DIIEMAVYGDVMRPGNQCRCRTIAEKLGKFKPKDDTDACKLP 162


>Glyma17g10930.1 
          Length = 207

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 85/124 (68%)

Query: 19  RSFDSKTKTICWTKADVVPGRHPDRWRKDAAGNIVCKRFFNCLGCLCYEYDHIVPFSKGG 78
           RSF    K  CW KAD V GR PDRWR+DA GN + ++   C GCLC++YDHI+P+SKGG
Sbjct: 82  RSFPHSVKQKCWEKADKVKGRDPDRWRRDALGNTLFRKLVGCPGCLCHDYDHIIPYSKGG 141

Query: 79  ESTAENCQILQSRVNRFKSDKSQIDSEELKGYSCDVNFTDKELDVIEMAVYGDVIRPGNQ 138
           EST ENCQ+LQ+ VNR K ++++I   EL   S     +D+++D++E++ YG+V R  + 
Sbjct: 142 ESTLENCQVLQATVNRSKGNRTEISKAELIQKSSYCRVSDRDMDLLELSAYGNVRRGPDS 201

Query: 139 CRCR 142
             CR
Sbjct: 202 GGCR 205