Miyakogusa Predicted Gene
- Lj4g3v1561700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1561700.1 Non Chatacterized Hit- tr|B9FSH6|B9FSH6_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,38.89,0.0000004,"Winged helix" DNA-binding domain,NULL;
E2F_TDP,Transcription factor E2F/dimerisation partner
(TDP);,CUFF.49420.1
(383 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma17g10130.1 536 e-152
Glyma17g10130.2 489 e-138
Glyma05g01760.1 449 e-126
Glyma04g34870.1 333 2e-91
Glyma04g34870.2 291 1e-78
Glyma06g19840.1 242 5e-64
Glyma12g09860.1 66 5e-11
Glyma02g35850.1 65 1e-10
Glyma10g09410.1 65 1e-10
Glyma06g02740.1 61 2e-09
Glyma04g02720.2 60 3e-09
Glyma04g02720.1 60 3e-09
Glyma11g18400.1 59 6e-09
Glyma02g35850.2 54 4e-07
>Glyma17g10130.1
Length = 380
Score = 536 bits (1382), Expect = e-152, Method: Compositional matrix adjust.
Identities = 260/372 (69%), Positives = 308/372 (82%), Gaps = 5/372 (1%)
Query: 16 KHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVL 75
+H+TYNRKQKSLGLLCTNFLSLYNRD +HLIGLDDAA+RLGVERRRIYDIVNVLESIGVL
Sbjct: 10 RHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVL 69
Query: 76 SRKAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEGFGNPS-T 134
SRKAKNQYTW+GF AIPL LQ+LK+EGL+E S+ G + KVSDDEDDEE NP+ T
Sbjct: 70 SRKAKNQYTWRGFAAIPLTLQDLKEEGLKENSNSLRGPGNHDKVSDDEDDEETQSNPAAT 129
Query: 135 GSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXXXXXXXXXXXH 194
GSQ++K NSTLP+ +KN+NRREKSLALLTQNFVKLF+CSNVE+IS H
Sbjct: 130 GSQSDKLNPNSTLPKPLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAH 189
Query: 195 NTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNESVSTSNLNES 254
NTS+MRTKVRRLYDIANVLSSM+LIEKTHT DTRKPAFRWLG +G+T +E++ SNLN+S
Sbjct: 190 NTSVMRTKVRRLYDIANVLSSMNLIEKTHTMDTRKPAFRWLGSEGKTWDETLHKSNLNDS 249
Query: 255 RKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQADKSNLQQDTKQ--- 311
RKRAFG+D+TNISF RN+ +LF +GD N KK + +EN L +AD++NL+Q KQ
Sbjct: 250 RKRAFGSDITNISFERNKVELFTSGDLNPNPKKPR-MENGSGLGEADENNLKQGIKQASK 308
Query: 312 TYQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQALKELFSHYMEAWRSWY 371
+Y+FGPFAPA V K G S+N+N+KQVHDW SLATAH P+YQN+AL+ELFSHYMEAW+ WY
Sbjct: 309 SYEFGPFAPACVPKVGASQNNNMKQVHDWGSLATAHSPQYQNEALRELFSHYMEAWKLWY 368
Query: 372 SEVAGKRSIQTL 383
SE+A KR +Q L
Sbjct: 369 SEIARKRPLQIL 380
>Glyma17g10130.2
Length = 354
Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/346 (69%), Positives = 284/346 (82%), Gaps = 5/346 (1%)
Query: 16 KHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVL 75
+H+TYNRKQKSLGLLCTNFLSLYNRD +HLIGLDDAA+RLGVERRRIYDIVNVLESIGVL
Sbjct: 10 RHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVL 69
Query: 76 SRKAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEGFGNPS-T 134
SRKAKNQYTW+GF AIPL LQ+LK+EGL+E S+ G + KVSDDEDDEE NP+ T
Sbjct: 70 SRKAKNQYTWRGFAAIPLTLQDLKEEGLKENSNSLRGPGNHDKVSDDEDDEETQSNPAAT 129
Query: 135 GSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXXXXXXXXXXXH 194
GSQ++K NSTLP+ +KN+NRREKSLALLTQNFVKLF+CSNVE+IS H
Sbjct: 130 GSQSDKLNPNSTLPKPLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAH 189
Query: 195 NTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNESVSTSNLNES 254
NTS+MRTKVRRLYDIANVLSSM+LIEKTHT DTRKPAFRWLG +G+T +E++ SNLN+S
Sbjct: 190 NTSVMRTKVRRLYDIANVLSSMNLIEKTHTMDTRKPAFRWLGSEGKTWDETLHKSNLNDS 249
Query: 255 RKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQADKSNLQQDTKQ--- 311
RKRAFG+D+TNISF RN+ +LF +GD N KK + +EN L +AD++NL+Q KQ
Sbjct: 250 RKRAFGSDITNISFERNKVELFTSGDLNPNPKKPR-MENGSGLGEADENNLKQGIKQASK 308
Query: 312 TYQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQALK 357
+Y+FGPFAPA V K G S+N+N+KQVHDW SLATAH P+YQN+ K
Sbjct: 309 SYEFGPFAPACVPKVGASQNNNMKQVHDWGSLATAHSPQYQNEGNK 354
>Glyma05g01760.1
Length = 403
Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/414 (59%), Positives = 287/414 (69%), Gaps = 66/414 (15%)
Query: 16 KHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVL 75
+H TYNRKQKSLGLLCTNFLSLY+R ++HLIGLDDAA RLGVERRRIYDIVNVLESIG+L
Sbjct: 10 RHCTYNRKQKSLGLLCTNFLSLYDRGSVHLIGLDDAAIRLGVERRRIYDIVNVLESIGLL 69
Query: 76 SRKAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDG-GNDSGKVSDDEDDEEGFGNPST 134
SRKAKNQY W+GF AIP LQELK+EGL++ S+ G GND+ KVSDDEDDEE NP+T
Sbjct: 70 SRKAKNQYIWRGFVAIPHTLQELKEEGLKDNSNFLRGSGNDNDKVSDDEDDEETLSNPAT 129
Query: 135 GSQNEKSMSNS-TLPRSMKNDN-----------------------------RREKSLALL 164
GSQ++K NS TL +S+KN N + SL L
Sbjct: 130 GSQSDKLNPNSSTLTKSLKNGNFSLLLAISIIIIIIIIIIWKSLVKKIANLKCGLSLLLA 189
Query: 165 TQNFVK---------LFLCSN---VEMISXXXXXXXXXXXXHNTSIMRTKVRRLYDIANV 212
+ V L LC VE+IS HNTS+MRTKVRRLYDIANV
Sbjct: 190 AEPTVAFWLKIEGKNLLLCLPRILVELISLDEAAKLLLGDAHNTSVMRTKVRRLYDIANV 249
Query: 213 LSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNESVSTSNLNESRKRAFGTDVTNISFARNR 272
LSSM+LIEKTHT DTRKPAFRWLG +G+T NE++ SNLNESRKRAFG+D+TNISF RN
Sbjct: 250 LSSMNLIEKTHTTDTRKPAFRWLGSEGKTWNETLHKSNLNESRKRAFGSDITNISFERN- 308
Query: 273 TDLFMNGDFGQNSKKQKILENDGVLSQADKSNLQQDTKQT---YQFGPFAPAYVSKAGNS 329
N +FG L QAD++NL+Q TKQ YQFGPFAPA V K G S
Sbjct: 309 -----NVEFG--------------LGQADENNLKQGTKQASKNYQFGPFAPACVPKVGAS 349
Query: 330 ENSNVKQVHDWESLATAHCPRYQNQALKELFSHYMEAWRSWYSEVAGKRSIQTL 383
EN+N+KQVH W+SLATA+ P+YQN+AL+EL+SHYMEAW+SWYSE+AGKRS+Q L
Sbjct: 350 ENNNLKQVHGWDSLATANSPQYQNEALRELYSHYMEAWKSWYSEIAGKRSLQIL 403
>Glyma04g34870.1
Length = 340
Score = 333 bits (854), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 235/370 (63%), Gaps = 50/370 (13%)
Query: 17 HHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAAS--------RLGVERRRIYDIVNV 68
HHTY+RKQKSLGLLCT LS + A R + I D +
Sbjct: 7 HHTYSRKQKSLGLLCTKSLSFLLFLFFEFVQQGRCAINRFLFYLLRHDYVKYAISDWIAH 66
Query: 69 LESIGVLSRKAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEG 128
+ VL+RKAKNQ TWKGF AI +ALQELKDEGL+E
Sbjct: 67 MLCSHVLARKAKNQCTWKGFSAIHVALQELKDEGLKE----------------------- 103
Query: 129 FGNPSTGSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXXXXXX 188
NP GS ++ SN ++ + RREKSLALLTQNFVKLF+CSN EMIS
Sbjct: 104 --NP--GSSDD---SNPSINLVLTVLGRREKSLALLTQNFVKLFVCSNFEMISLDEAAKL 156
Query: 189 XXXXXHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNESVST 248
+N RTKVRRLYDIANVLSSM+LIEKTHT +TRKPAFRWLG++G+T +ES T
Sbjct: 157 LLGNANN----RTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGVRGKTWSESAQT 212
Query: 249 SNLNESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQADKSNLQQD 308
N+ ES+KR FG+D+TNI+F R + DL M+G QN K Q EN +Q +K +L++D
Sbjct: 213 -NVKESQKRMFGSDITNINFKR-KVDLSMDG---QNFKTQNQQENISPRAQLEKKSLKKD 267
Query: 309 TKQT---YQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQALKELFSHYME 365
KQT YQFGPFAPAYV K G SEN++VKQV DWESLA H P+YQNQALK+LFSHYME
Sbjct: 268 AKQTSMSYQFGPFAPAYVHKVGTSENNSVKQVQDWESLAQEHRPQYQNQALKDLFSHYME 327
Query: 366 AWRSWYSEVA 375
AW+SWYSE A
Sbjct: 328 AWKSWYSEAA 337
>Glyma04g34870.2
Length = 317
Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 179/350 (51%), Positives = 215/350 (61%), Gaps = 50/350 (14%)
Query: 17 HHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAAS--------RLGVERRRIYDIVNV 68
HHTY+RKQKSLGLLCT LS + A R + I D +
Sbjct: 7 HHTYSRKQKSLGLLCTKSLSFLLFLFFEFVQQGRCAINRFLFYLLRHDYVKYAISDWIAH 66
Query: 69 LESIGVLSRKAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEG 128
+ VL+RKAKNQ TWKGF AI +ALQELKDEGL+E
Sbjct: 67 MLCSHVLARKAKNQCTWKGFSAIHVALQELKDEGLKE----------------------- 103
Query: 129 FGNPSTGSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXXXXXX 188
NP GS ++ SN ++ + RREKSLALLTQNFVKLF+CSN EMIS
Sbjct: 104 --NP--GSSDD---SNPSINLVLTVLGRREKSLALLTQNFVKLFVCSNFEMISLDEAAKL 156
Query: 189 XXXXXHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNESVST 248
+N RTKVRRLYDIANVLSSM+LIEKTHT +TRKPAFRWLG++G+T +ES T
Sbjct: 157 LLGNANN----RTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGVRGKTWSESAQT 212
Query: 249 SNLNESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQADKSNLQQD 308
N+ ES+KR FG+D+TNI+F R + DL M+ GQN K Q EN +Q +K +L++D
Sbjct: 213 -NVKESQKRMFGSDITNINFKR-KVDLSMD---GQNFKTQNQQENISPRAQLEKKSLKKD 267
Query: 309 TKQT---YQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQA 355
KQT YQFGPFAPAYV K G SEN++VKQV DWESLA H P+YQNQ
Sbjct: 268 AKQTSMSYQFGPFAPAYVHKVGTSENNSVKQVQDWESLAQEHRPQYQNQG 317
>Glyma06g19840.1
Length = 213
Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/167 (74%), Positives = 142/167 (85%), Gaps = 2/167 (1%)
Query: 17 HHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLS 76
HHTY+RKQKSLGLLCTNFLSLYN++ + L+GLDDAASRLGVERRRIYDIVNVLES+GVL+
Sbjct: 7 HHTYSRKQKSLGLLCTNFLSLYNKEGVRLVGLDDAASRLGVERRRIYDIVNVLESVGVLT 66
Query: 77 RKAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEG-FGNPSTG 135
RKAKNQYTWKGF AIP ALQELKDEGL+E FD ND+ KVSDDE++EE F N + G
Sbjct: 67 RKAKNQYTWKGFCAIPAALQELKDEGLKENPGSFDDSNDNAKVSDDEEEEEETFPNINIG 126
Query: 136 SQNEKSMSNSTLP-RSMKNDNRREKSLALLTQNFVKLFLCSNVEMIS 181
SQ+EK + T +S KN+NRREKSLALLTQNFVKLF+CSN EMIS
Sbjct: 127 SQSEKENPDYTATVKSSKNENRREKSLALLTQNFVKLFVCSNFEMIS 173
>Glyma12g09860.1
Length = 450
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F++L + ++ L+ AA L V++RRIYDI NVLE IG++ +K KN
Sbjct: 131 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 190
Query: 82 QYTWKGF 88
+ WKG
Sbjct: 191 RIQWKGL 197
>Glyma02g35850.1
Length = 468
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F++L ++ L+ AA L V++RRIYDI NVLE IG++ +K KN
Sbjct: 148 RYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 207
Query: 82 QYTWKGFRA 90
+ WKG +
Sbjct: 208 RIHWKGIES 216
>Glyma10g09410.1
Length = 466
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F++L ++ L+ AA L V++RRIYDI NVLE IG++ +K KN
Sbjct: 148 RYDSSLGLLTKKFINLVKHAEGGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 207
Query: 82 QYTWKGFRA 90
+ WKG +
Sbjct: 208 RIHWKGIES 216
>Glyma06g02740.1
Length = 325
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F+SL + L+ A L V++RRIYDI NVLE +G++ + +KN
Sbjct: 75 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKN 134
Query: 82 QYTWKGFRAIPLALQELKDE 101
WKG L QEL+D+
Sbjct: 135 HIQWKGCDG--LGPQELEDQ 152
>Glyma04g02720.2
Length = 343
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F+SL + L+ A L V++RRIYDI NVLE +G++ + +KN
Sbjct: 74 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKN 133
Query: 82 QYTWKGFRAIPLALQELKDE 101
WKG L +EL+D+
Sbjct: 134 HIKWKGCDG--LGPRELEDQ 151
>Glyma04g02720.1
Length = 343
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F+SL + L+ A L V++RRIYDI NVLE +G++ + +KN
Sbjct: 74 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKN 133
Query: 82 QYTWKGFRAIPLALQELKDE 101
WKG L +EL+D+
Sbjct: 134 HIKWKGCDG--LGPRELEDQ 151
>Glyma11g18400.1
Length = 296
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 29 LLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGF 88
LL F++L + ++ L+ AA L V++RRIYDI NVLE IG++ +K KN+ WKG
Sbjct: 1 LLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGL 60
>Glyma02g35850.2
Length = 421
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 16 KHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVL 75
K+ Y R+++ + +F++L ++ L+ AA L V++RRIYDI NVLE IG++
Sbjct: 104 KYKFYFREKR----MTKSFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLI 159
Query: 76 SRKAKNQYTWK 86
+K KN+ WK
Sbjct: 160 EKKLKNRIHWK 170