Miyakogusa Predicted Gene

Lj4g3v1560530.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1560530.1 tr|I8RPS3|I8RPS3_YERPE Ribosomal RNA small
subunit methyltransferase G OS=Yersinia pestis PY-102
GN=,42.75,2e-19,no description,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; GidB,rRNA small subunit methyl,CUFF.49404.1
         (169 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g01800.1                                                       270   4e-73
Glyma17g10090.1                                                       129   2e-30

>Glyma05g01800.1 
          Length = 274

 Score =  270 bits (691), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 141/161 (87%), Gaps = 4/161 (2%)

Query: 4   NLQFSPGTFIKHLTSRKFTTH---CLHKSSTPSLSHFGTLTSRQKDQIHLYVDALLQWNK 60
           NLQFS  TF KHLT RKF      C HKS   +LSHFG LTSRQKDQIHLYV+ LLQWNK
Sbjct: 7   NLQFSRWTFFKHLTPRKFKLAPPLCQHKS-VATLSHFGILTSRQKDQIHLYVETLLQWNK 65

Query: 61  RMNLTAVREVNQVMERHVEDSLAILPPLSDCYRAHCGGSGDKLSLVDVGTGAGLPGVVLA 120
           RMNLTAVREVN+VMERHVEDSLAILPPLSDCYR+HC  S DKLSLVDVGTGAGLPGVVLA
Sbjct: 66  RMNLTAVREVNEVMERHVEDSLAILPPLSDCYRSHCSASCDKLSLVDVGTGAGLPGVVLA 125

Query: 121 IARPEWDVTLLESMNKRCVFLEHVVSVVGSSNIQVVRGRAE 161
           IARPEWDVTL+ESMNKRCVFLEHVV V+GSSNI++VRGRAE
Sbjct: 126 IARPEWDVTLMESMNKRCVFLEHVVGVIGSSNIKIVRGRAE 166


>Glyma17g10090.1 
          Length = 187

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 65/69 (94%)

Query: 93  RAHCGGSGDKLSLVDVGTGAGLPGVVLAIARPEWDVTLLESMNKRCVFLEHVVSVVGSSN 152
           R+HCG S +KLSLVDVGTGAGLPG+VLAI RPEWDVTL+ESMNKRCVFLEHVV V+GSSN
Sbjct: 11  RSHCGASCNKLSLVDVGTGAGLPGIVLAITRPEWDVTLMESMNKRCVFLEHVVGVIGSSN 70

Query: 153 IQVVRGRAE 161
           IQ+VRGRAE
Sbjct: 71  IQIVRGRAE 79