Miyakogusa Predicted Gene

Lj4g3v1559460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1559460.1 tr|B6TYH2|B6TYH2_MAIZE ROS1 protein OS=Zea mays
PE=2 SV=1,52.81,3e-18,DNA-glycosylase,DNA glycosylase,CUFF.49395.1
         (120 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g01820.1                                                       147   3e-36
Glyma19g16240.1                                                        71   2e-13

>Glyma05g01820.1 
          Length = 284

 Score =  147 bits (370), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 85/104 (81%), Gaps = 6/104 (5%)

Query: 21  PQPKSVRV----EENLKNPFPSHTRPTPQECQTVRDTLLSLHGIPPELAKYRQLQPPNSG 76
           P+PKSVR      +N+K+PFPSH RPTPQEC+ VRDTLL+LHGIPPELAKYR+L P +  
Sbjct: 17  PKPKSVRAGSTRTDNVKDPFPSHARPTPQECEAVRDTLLALHGIPPELAKYRKLPPSDEP 76

Query: 77  T--EPEETVLDGLVRTVLSQNTTEANSQKAFASLKSSFPDWELV 118
              +P E VLDGLVRTVLSQNTTEANSQKAFASLKSSFP WE V
Sbjct: 77  VQLQPPEPVLDGLVRTVLSQNTTEANSQKAFASLKSSFPSWEQV 120


>Glyma19g16240.1 
          Length = 146

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/38 (92%), Positives = 35/38 (92%)

Query: 81  ETVLDGLVRTVLSQNTTEANSQKAFASLKSSFPDWELV 118
           E VLDGLVRTVLSQNTTEANSQKAFASLKSSFP WE V
Sbjct: 24  EPVLDGLVRTVLSQNTTEANSQKAFASLKSSFPSWEHV 61