Miyakogusa Predicted Gene

Lj4g3v1535120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1535120.1 Non Chatacterized Hit- tr|B9RB56|B9RB56_RICCO
RNA-dependent RNA polymerase, putative OS=Ricinus comm,63.89,3e-18,
,CUFF.49358.1
         (72 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g09920.1                                                       106   6e-24
Glyma05g02000.1                                                       104   2e-23

>Glyma17g09920.1 
          Length = 1120

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 58/72 (80%)

Query: 1   MVKCCPASKLPYEDLFQLNCLVHTQKISLASVDDELIDLFGSLTDETKAMVFQKFHKLNS 60
           +VK    SKLPYE +FQLN LVHTQKISLASVDDELIDL   L +ET+A+VFQK HK++ 
Sbjct: 277 LVKHATQSKLPYEAVFQLNSLVHTQKISLASVDDELIDLLADLDEETRAVVFQKLHKMSF 336

Query: 61  TCYEPLKFVNNQ 72
           TCYEPLKFV  Q
Sbjct: 337 TCYEPLKFVKTQ 348


>Glyma05g02000.1 
          Length = 1121

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 57/72 (79%)

Query: 1   MVKCCPASKLPYEDLFQLNCLVHTQKISLASVDDELIDLFGSLTDETKAMVFQKFHKLNS 60
           +VK    SKLPYE LFQLN LVHTQKISLASVDDELIDL   L +ET+A++F K HK++ 
Sbjct: 278 LVKRASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLAGLDEETRAVIFLKLHKMSF 337

Query: 61  TCYEPLKFVNNQ 72
           TCYEPLKFV  Q
Sbjct: 338 TCYEPLKFVKTQ 349