Miyakogusa Predicted Gene

Lj4g3v1535060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1535060.1 tr|Q1XG54|Q1XG54_CRYJA Similarity to ribonuclease
III OS=Cryptomeria japonica PE=2 SV=1,38.21,1e-17,RNase III
domain-like,Ribonuclease III domain; Ribonuclease III
family,Ribonuclease III domain; no d,CUFF.49408.1
         (179 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g09900.1                                                       241   4e-64
Glyma03g13530.1                                                        94   8e-20
Glyma14g16100.1                                                        69   4e-12

>Glyma17g09900.1 
          Length = 188

 Score =  241 bits (614), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 129/152 (84%)

Query: 28  LLSPFPSALETLQKQLGYNFKTISLLRRAMTHASFSEENNKALSILGAAVIETSASFHLI 87
           L SPF +ALETLQKQLGY FK+I LLRRAMTHASFSEENNKA +ILGA+VIETS SFHL+
Sbjct: 37  LSSPFSTALETLQKQLGYTFKSIDLLRRAMTHASFSEENNKAFAILGASVIETSVSFHLL 96

Query: 88  SKDIDISAKELNRRLSQVSNVESSCAVDGVHLGLHKVVRVSPKTNSSAPAVVCXXXXXXX 147
           S+D+D+S+KELNRRLSQ++NV+SSCAVDG  LGLHKVVRVSPKTNSSAPAVVC       
Sbjct: 97  SRDVDLSSKELNRRLSQITNVDSSCAVDGTRLGLHKVVRVSPKTNSSAPAVVCGAFRAIF 156

Query: 148 XXXXXDTGKSDDAGNVFWTIHGVGDVGVAAAL 179
                DTGKSDDAGNVFW +HG GD+GVA AL
Sbjct: 157 GAVAIDTGKSDDAGNVFWNLHGGGDLGVAVAL 188


>Glyma03g13530.1 
          Length = 64

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 53/62 (85%)

Query: 43  LGYNFKTISLLRRAMTHASFSEENNKALSILGAAVIETSASFHLISKDIDISAKELNRRL 102
           + Y FK+I LL RA THASFSEENNKA +IL A+VIET  SFHL+SKD+D+S+KELNR+L
Sbjct: 3   IRYTFKSIDLLCRATTHASFSEENNKAFAILTASVIETFVSFHLLSKDVDVSSKELNRQL 62

Query: 103 SQ 104
           SQ
Sbjct: 63  SQ 64


>Glyma14g16100.1 
          Length = 44

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 37/43 (86%)

Query: 57 MTHASFSEENNKALSILGAAVIETSASFHLISKDIDISAKELN 99
          MTH SFS+ENNKA  IL A VIETS SFHL+SKD+D+S+KELN
Sbjct: 1  MTHTSFSKENNKAFIILSANVIETSISFHLLSKDVDVSSKELN 43