Miyakogusa Predicted Gene

Lj4g3v1388310.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1388310.2 tr|F4KAP9|F4KAP9_ARATH SAP domain-containing
protein OS=Arabidopsis thaliana GN=At5g63460 PE=4 SV=1,42.42,3e-19,SAP
domain,NULL; DDA1,Ubiquitin ligase, Det1/DDB1-complexing;
SAP,DNA-binding SAP; no description,DN,CUFF.49112.2
         (144 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g13860.1                                                       203   4e-53
Glyma05g03280.1                                                       154   3e-38

>Glyma17g13860.1 
          Length = 180

 Score =  203 bits (517), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 116/155 (74%), Positives = 126/155 (81%), Gaps = 13/155 (8%)

Query: 1   MDA-NPSSR-VSPFLTNLPSRGLFSSPVISSNPGGMRVYVCDHETSPPEDQLIKTNQQNI 58
           MDA NPSS   SPFL NLPSRGLFSS V+SSNPGGMRVYVC+H+TSPPE Q IKTNQQNI
Sbjct: 26  MDAPNPSSSGASPFLANLPSRGLFSSTVVSSNPGGMRVYVCNHDTSPPEGQHIKTNQQNI 85

Query: 59  LIRSLTLKN---------GSDASKKRTAEKALDSRASAKRTT-PINTRQEGSNSQTPNRD 108
           LIRSLTLK          GSD S+KR AEK L+ RASAK+T   IN+RQEGSNSQT  RD
Sbjct: 86  LIRSLTLKKQKGDSSSKDGSDGSRKRNAEKGLE-RASAKKTNNQINSRQEGSNSQTTTRD 144

Query: 109 FHSLTVERLRALLKAKGLSTKGKKEELITRLKEVS 143
           FH LTVERLRALLK+KGLSTKGKKEELITRLK+ +
Sbjct: 145 FHHLTVERLRALLKSKGLSTKGKKEELITRLKDAT 179


>Glyma05g03280.1 
          Length = 194

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 107/150 (71%), Gaps = 26/150 (17%)

Query: 1   MDA-NPSSR-VSPFLTNLPSRGLFSSPVISSNPGGMRVYVCDHETSPPEDQLIKTNQQNI 58
           MDA NPSS   S FL NLPSRGLFSS V+SSNPGGMRVYVCDH+TSPPE Q IKTNQQNI
Sbjct: 22  MDALNPSSSGASLFLANLPSRGLFSSTVVSSNPGGMRVYVCDHDTSPPEGQHIKTNQQNI 81

Query: 59  LIRSLTLKN---------GSDASKKRTAEKALDSRASAKRT-TPINTRQEGSNSQTPNRD 108
           LIRSLTLK          GSD S+KR AEK L+ RASAK+T   IN+RQEGSN       
Sbjct: 82  LIRSLTLKKQRGDSSSKDGSDGSRKRNAEKGLE-RASAKKTNNQINSRQEGSN------- 133

Query: 109 FHSLTVERLRALLKAKGLSTKGKKEELITR 138
                 +RLRALLK+KGLSTKGKK  +  R
Sbjct: 134 ------KRLRALLKSKGLSTKGKKASIWKR 157