Miyakogusa Predicted Gene

Lj4g3v1345770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1345770.1 tr|G7IAZ6|G7IAZ6_MEDTR Survival of motor neuron
protein-interacting protein OS=Medicago truncatula
G,41.71,2e-18,seg,NULL;
coiled-coil,NULL,NODE_82077_length_658_cov_37.095745.path1.1
         (203 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g44220.1                                                        83   2e-16
Glyma20g39000.1                                                        63   2e-10

>Glyma10g44220.1 
          Length = 507

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 34/128 (26%)

Query: 76  SLGLGIEVIDETALLETIPRKITTAASKNARRRAXXXXXXXXXXXXQIRHHKKTVTAEEI 135
           SLGLGIEVIDETALL+++ +K     +KN                    +H+K+  + +I
Sbjct: 81  SLGLGIEVIDETALLDSVAKK--NGGTKN--------------------NHQKSQPSNKI 118

Query: 136 PVLRNSEAKGGKYSRKDMMALRFVNVAGQRRFWKTIYANLESGVAQEYDTLAVNVHHLPC 195
                      KYSRK++  LRF+N+A QR+FWK I+A  +S VA EYDTLA      P 
Sbjct: 119 --------GNRKYSRKELEGLRFLNMARQRKFWKAIHAAFQSTVAIEYDTLAST----PL 166

Query: 196 LPNKKPIL 203
            P+ KPIL
Sbjct: 167 PPHNKPIL 174


>Glyma20g39000.1 
          Length = 382

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 5/57 (8%)

Query: 147 KYSRKDMMALRFVNVAGQRRFWKTIYANLESGVAQEYDTLAVNVHHLPCLPNKKPIL 203
           KYSRK++ +LRFVN+A QR+FWK I+A  ++ VA EYD LA +      LP+ KPIL
Sbjct: 40  KYSRKELESLRFVNMARQRKFWKAIHAAFQTTVAMEYDALASSP-----LPHNKPIL 91