Miyakogusa Predicted Gene

Lj4g3v1345670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1345670.1 Non Chatacterized Hit- tr|F6HYQ6|F6HYQ6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,66.67,0.0000000000003,seg,NULL; FAMILY NOT
NAMED,NULL,NODE_11325_length_351_cov_378.435883.path2.1
         (55 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g41020.1                                                        54   4e-08
Glyma03g38420.1                                                        54   4e-08
Glyma10g30540.1                                                        47   4e-06
Glyma20g36860.1                                                        47   4e-06
Glyma03g40790.1                                                        46   9e-06

>Glyma19g41020.1 
          Length = 243

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/28 (82%), Positives = 24/28 (85%)

Query: 21  IANWKISSPGDHPEDVKARLKFWAQAVA 48
           I NW+ISSPGD P DVKARLK WAQAVA
Sbjct: 207 ITNWRISSPGDDPRDVKARLKVWAQAVA 234


>Glyma03g38420.1 
          Length = 240

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/28 (82%), Positives = 25/28 (89%)

Query: 21  IANWKISSPGDHPEDVKARLKFWAQAVA 48
           IANW+IS+PGD P DVKARLK WAQAVA
Sbjct: 204 IANWRISAPGDDPRDVKARLKVWAQAVA 231


>Glyma10g30540.1 
          Length = 195

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 24/29 (82%)

Query: 23  NWKISSPGDHPEDVKARLKFWAQAVACTV 51
           +WKI SPGD PE VK +L+ WAQAVAC+V
Sbjct: 163 SWKICSPGDDPEHVKTKLRHWAQAVACSV 191


>Glyma20g36860.1 
          Length = 195

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 24/29 (82%)

Query: 23  NWKISSPGDHPEDVKARLKFWAQAVACTV 51
           +WKI SPGD PE VK +L+ WAQAVAC+V
Sbjct: 163 SWKICSPGDDPEHVKTKLRHWAQAVACSV 191


>Glyma03g40790.1 
          Length = 172

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query: 23  NWKISSPGDHPEDVKARLKFWAQAVACTV 51
           +WKI SPGD PE VK +L+ WAQAVAC++
Sbjct: 140 SWKICSPGDDPEHVKTKLRHWAQAVACSL 168