Miyakogusa Predicted Gene

Lj4g3v1288460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1288460.1 tr|A9SUD2|A9SUD2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_166600,57.14,0.16,seg,NULL; DUF2499,Uncharacterised
protein family Ycf49,NODE_3777_length_822_cov_60.150852.path2.1
         (168 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g42250.2                                                       200   5e-52
Glyma01g42250.1                                                       200   5e-52
Glyma11g03110.1                                                       200   6e-52
Glyma01g42250.3                                                       127   5e-30

>Glyma01g42250.2 
          Length = 167

 Score =  200 bits (509), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 117/165 (70%), Gaps = 7/165 (4%)

Query: 8   TLCLPRPC--CTPKIPFPSDSRISSYRIGAGKPQQASTKAKAGLSLF--LDFVEPAS-LQ 62
           TL L +P    TPKIP  S  R+    IG  K +  +     GL LF  L+FVEP S LQ
Sbjct: 5   TLYLAKPSWSYTPKIP--SLPRVRDSGIGTVKTKVKAKAGILGLGLFHFLNFVEPGSCLQ 62

Query: 63  LQLHEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGYEAWKGLSWGMVPLLGGAFC 122
           LQ HEP NALSLPTWA+HVSSV EWIIAMALVWQYGEKSGY AWKGLSWGMVPLLGGAFC
Sbjct: 63  LQFHEPPNALSLPTWAIHVSSVAEWIIAMALVWQYGEKSGYPAWKGLSWGMVPLLGGAFC 122

Query: 123 ACTWHFFYNDESXXXXXXXXXXXXXXGNATMCIAAYRIYKSSRES 167
           ACTWHFFYN +S              GNATMCIAAYRIYKSS++S
Sbjct: 123 ACTWHFFYNSDSLEVLVALQAALTIIGNATMCIAAYRIYKSSQDS 167


>Glyma01g42250.1 
          Length = 167

 Score =  200 bits (509), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 117/165 (70%), Gaps = 7/165 (4%)

Query: 8   TLCLPRPC--CTPKIPFPSDSRISSYRIGAGKPQQASTKAKAGLSLF--LDFVEPAS-LQ 62
           TL L +P    TPKIP  S  R+    IG  K +  +     GL LF  L+FVEP S LQ
Sbjct: 5   TLYLAKPSWSYTPKIP--SLPRVRDSGIGTVKTKVKAKAGILGLGLFHFLNFVEPGSCLQ 62

Query: 63  LQLHEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGYEAWKGLSWGMVPLLGGAFC 122
           LQ HEP NALSLPTWA+HVSSV EWIIAMALVWQYGEKSGY AWKGLSWGMVPLLGGAFC
Sbjct: 63  LQFHEPPNALSLPTWAIHVSSVAEWIIAMALVWQYGEKSGYPAWKGLSWGMVPLLGGAFC 122

Query: 123 ACTWHFFYNDESXXXXXXXXXXXXXXGNATMCIAAYRIYKSSRES 167
           ACTWHFFYN +S              GNATMCIAAYRIYKSS++S
Sbjct: 123 ACTWHFFYNSDSLEVLVALQAALTIIGNATMCIAAYRIYKSSQDS 167


>Glyma11g03110.1 
          Length = 170

 Score =  200 bits (508), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 119/170 (70%), Gaps = 14/170 (8%)

Query: 8   TLCLPRP--CCTPKIPFPSDSRISSYRIGAGKPQQASTKAKAGLSL-------FLDFVEP 58
           TL L +P    TPKIPFP   R+    IG  K  Q  T+ KAG+         FL+FVEP
Sbjct: 5   TLYLAKPPSSFTPKIPFP---RVRDSGIGTVK-CQVKTQVKAGILGLGLGLFHFLNFVEP 60

Query: 59  AS-LQLQLHEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGYEAWKGLSWGMVPLL 117
            S LQLQ HEP NALSLPTWA+HVSSV EWIIAMALVWQYGEKSGY AWKGLSWGMVPLL
Sbjct: 61  GSCLQLQFHEPPNALSLPTWAIHVSSVAEWIIAMALVWQYGEKSGYPAWKGLSWGMVPLL 120

Query: 118 GGAFCACTWHFFYNDESXXXXXXXXXXXXXXGNATMCIAAYRIYKSSRES 167
           GGAFCACTWHFFYN ES              GNATMCIAAYRIYKSS+ S
Sbjct: 121 GGAFCACTWHFFYNSESLEVLVALQAALTVIGNATMCIAAYRIYKSSQGS 170


>Glyma01g42250.3 
          Length = 131

 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 79/112 (70%), Gaps = 7/112 (6%)

Query: 8   TLCLPRPC--CTPKIPFPSDSRISSYRIGAGKPQQASTKAKAGLSLF--LDFVEPAS-LQ 62
           TL L +P    TPKIP  S  R+    IG  K +  +     GL LF  L+FVEP S LQ
Sbjct: 5   TLYLAKPSWSYTPKIP--SLPRVRDSGIGTVKTKVKAKAGILGLGLFHFLNFVEPGSCLQ 62

Query: 63  LQLHEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGYEAWKGLSWGMV 114
           LQ HEP NALSLPTWA+HVSSV EWIIAMALVWQYGEKSGY AWKGLSWGMV
Sbjct: 63  LQFHEPPNALSLPTWAIHVSSVAEWIIAMALVWQYGEKSGYPAWKGLSWGMV 114