Miyakogusa Predicted Gene

Lj4g3v1260350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1260350.1 Non Chatacterized Hit- tr|B7ZZS9|B7ZZS9_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,56.72,0.000000000000001,
,CUFF.48723.1
         (137 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g04600.1                                                       176   9e-45
Glyma17g15030.1                                                        59   2e-09

>Glyma05g04600.1 
          Length = 721

 Score =  176 bits (445), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 103/133 (77%), Gaps = 7/133 (5%)

Query: 1   MQLVLSPERAAIYGDREWRLSMLKAVESVLQGRGDSLCMVADDSVFLPLLVAQLSEAPHI 60
           +QLVL PER AIYGD+ WRLSMLKAV+S+LQGR   LC+VADDSVFLPLLVAQLSEA H+
Sbjct: 407 LQLVLPPERVAIYGDKGWRLSMLKAVQSMLQGRDHPLCLVADDSVFLPLLVAQLSEASHV 466

Query: 61  ISLLLGLKERGLQYLQAAANANHLPPNCIVVLGKRVKQLTTQDTHQKKVDLLIAEPFYLG 120
           +SLL GLKERGLQYLQAAA+AN L     + L      +         VDLLIAEPFY+G
Sbjct: 467 MSLLPGLKERGLQYLQAAAHANGLSQKGCIFLIPIAWWIYF-------VDLLIAEPFYVG 519

Query: 121 HDGMLPWQNLRFW 133
           HDGMLPWQNLRFW
Sbjct: 520 HDGMLPWQNLRFW 532


>Glyma17g15030.1 
          Length = 264

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 25/25 (100%)

Query: 109 VDLLIAEPFYLGHDGMLPWQNLRFW 133
           VDLL+AEPFY+GHDGMLPWQNLRFW
Sbjct: 69  VDLLLAEPFYVGHDGMLPWQNLRFW 93