Miyakogusa Predicted Gene

Lj4g3v1260340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1260340.1 tr|I1MGV6|I1MGV6_SOYBN 60S ribosomal protein L27
OS=Glycine max GN=Gma.55267 PE=3 SV=1,88.15,0,RIBOSOMAL_L27E,Ribosomal
protein L27e, conserved site; no description,Translation protein
SH3-like, ,CUFF.48726.1
         (135 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g26320.1                                                       199   6e-52
Glyma15g17010.1                                                       199   6e-52
Glyma09g05720.1                                                       197   3e-51
Glyma08g09230.1                                                       196   6e-51
Glyma14g39150.1                                                        52   2e-07

>Glyma05g26320.1 
          Length = 135

 Score =  199 bits (507), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 106/135 (78%)

Query: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTHGRPYGHCLVAGIKKYPSKVIXXXXXX 60
           MVKFLKPNKAVI+LQGRYAG+KAVIV+TFD+GT  RPYGHCLVAGIKKYPSKVI      
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRTFDEGTRERPYGHCLVAGIKKYPSKVIKKDSAK 60

Query: 61  XXXXXSRVKAFMKLVNYQHLMPTRYTLDVDLKDAVSTNALVSKDQKVTALXXXXXXXXXX 120
                SRVKAF+KLVNYQHLMPTRYTLDVDLKDAV+ + L +KD+KVTAL          
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVTPDVLATKDKKVTALKETKKRLEER 120

Query: 121 XXXGKNRWFFTKLRF 135
              GKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>Glyma15g17010.1 
          Length = 148

 Score =  199 bits (506), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 106/135 (78%)

Query: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTHGRPYGHCLVAGIKKYPSKVIXXXXXX 60
           MVKFLKPNKAVI+LQGRYAGKKAVIV+TFD+GT  RPYGHCLVAGIKKYP+KVI      
Sbjct: 14  MVKFLKPNKAVIVLQGRYAGKKAVIVRTFDEGTRERPYGHCLVAGIKKYPAKVIKKDSAK 73

Query: 61  XXXXXSRVKAFMKLVNYQHLMPTRYTLDVDLKDAVSTNALVSKDQKVTALXXXXXXXXXX 120
                SRVKAF+KLVNYQHLMPTRYTLDVDLKDAV+ + L +KD+KVTAL          
Sbjct: 74  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVTPDVLQAKDKKVTALKETKKRLEER 133

Query: 121 XXXGKNRWFFTKLRF 135
              GKNRWFFTKLRF
Sbjct: 134 FKTGKNRWFFTKLRF 148


>Glyma09g05720.1 
          Length = 135

 Score =  197 bits (501), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 106/135 (78%)

Query: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTHGRPYGHCLVAGIKKYPSKVIXXXXXX 60
           MVKFLKPNKAVI+LQGRYAGKKAVIV+TFD+GT  RPYGHCLVAGIKKYP+KVI      
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGKKAVIVRTFDEGTRERPYGHCLVAGIKKYPAKVIKKDSAK 60

Query: 61  XXXXXSRVKAFMKLVNYQHLMPTRYTLDVDLKDAVSTNALVSKDQKVTALXXXXXXXXXX 120
                SRVKAF+KLVNYQHLMPTRYTLDVDLKDAV+ + L +KD+KVTAL          
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVNPDVLNAKDKKVTALKETKKRLEER 120

Query: 121 XXXGKNRWFFTKLRF 135
              GKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>Glyma08g09230.1 
          Length = 135

 Score =  196 bits (498), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 105/135 (77%)

Query: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTHGRPYGHCLVAGIKKYPSKVIXXXXXX 60
           MVKFLKPNKAVI+LQGRYAG+KAVIV+TFD+GT  RPYGHCLVAGIKKYPSKVI      
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRTFDEGTRERPYGHCLVAGIKKYPSKVIKKDSAK 60

Query: 61  XXXXXSRVKAFMKLVNYQHLMPTRYTLDVDLKDAVSTNALVSKDQKVTALXXXXXXXXXX 120
                SRVKAF+KLVNYQHLMPTRYT DVDLKDAV+ + L +KD+KVTAL          
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTFDVDLKDAVTPDVLGTKDKKVTALKETKKRLEER 120

Query: 121 XXXGKNRWFFTKLRF 135
              GKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>Glyma14g39150.1 
          Length = 228

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 81  MPTRYTLDVDLKDAVSTNALVSKDQKVTALXXXXXXXXXXXXXGKNR--WFFTK 132
           MPTRYTLDVDLKDAV+ + L +KD+K TAL             GKNR  + FT 
Sbjct: 1   MPTRYTLDVDLKDAVNPDVLNAKDKKATALKETKKLLEERFKTGKNRPAYMFTN 54