Miyakogusa Predicted Gene

Lj4g3v1248000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1248000.1 Non Chatacterized Hit- tr|I3SF84|I3SF84_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,96.59,1.99993e-41,LSM,Ribonucleoprotein LSM domain; SMALL NUCLEAR
RIBONUCLEOPROTEIN E,NULL; snRNP Sm proteins,Ribonucl,CUFF.48712.1
         (88 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g16410.1                                                       176   5e-45
Glyma04g38600.1                                                       176   5e-45
Glyma13g01320.1                                                       175   8e-45
Glyma17g07460.1                                                       174   2e-44
Glyma03g14140.1                                                        82   2e-16
Glyma14g11580.1                                                        67   3e-12
Glyma05g18620.1                                                        54   4e-08
Glyma05g25800.2                                                        47   5e-06
Glyma05g25800.1                                                        47   5e-06

>Glyma06g16410.1 
          Length = 88

 Score =  176 bits (446), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 87/88 (98%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKNSRKTLGRILLKGDNITLMMNTGK 88
          NVKK SRKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88


>Glyma04g38600.1 
          Length = 88

 Score =  176 bits (446), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 87/88 (98%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKNSRKTLGRILLKGDNITLMMNTGK 88
          NVKK SRKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88


>Glyma13g01320.1 
          Length = 88

 Score =  175 bits (444), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 87/88 (98%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKNSRKTLGRILLKGDNITLMMNTGK 88
          N+KK SRKTLGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSRKTLGRILLKGDNITLMMNTGK 88


>Glyma17g07460.1 
          Length = 88

 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/88 (96%), Positives = 87/88 (98%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKNSRKTLGRILLKGDNITLMMNTGK 88
          ++KK SRKTLGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKKSRKTLGRILLKGDNITLMMNTGK 88


>Glyma03g14140.1 
          Length = 42

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/42 (92%), Positives = 41/42 (97%)

Query: 45 GFDEYMNLVLDDAEEVNVKKNSRKTLGRILLKGDNITLMMNT 86
          GFDEYMNLVLDDA+EVN+KK SRKTLGRILLKGDNITLMMNT
Sbjct: 1  GFDEYMNLVLDDAKEVNIKKKSRKTLGRILLKGDNITLMMNT 42


>Glyma14g11580.1 
          Length = 37

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/37 (91%), Positives = 35/37 (94%)

Query: 50 MNLVLDDAEEVNVKKNSRKTLGRILLKGDNITLMMNT 86
          MNLVLDDAEEVN+KK SRKTLGRILLK DNITLMMNT
Sbjct: 1  MNLVLDDAEEVNIKKKSRKTLGRILLKRDNITLMMNT 37


>Glyma05g18620.1 
          Length = 51

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 45 GFDEYMNLVLDDAEEVNVKKNSRKTLGRI 73
          GFDEYMNLVLDDAEEVN+KK SRKTL  +
Sbjct: 1  GFDEYMNLVLDDAEEVNIKKKSRKTLAML 29


>Glyma05g25800.2 
          Length = 87

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKNSRKT--L 70
          P  LI R + SK    IW+  + D  + G + GFD Y N+VL+D  E  +    R+   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKL 65

Query: 71 GRILLKGDNITLMMNTGK 88
           +ILL G+NI +++  G 
Sbjct: 66 DQILLNGNNIAILVPGGS 83


>Glyma05g25800.1 
          Length = 87

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKNSRKT--L 70
          P  LI R + SK    IW+  + D  + G + GFD Y N+VL+D  E  +    R+   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKL 65

Query: 71 GRILLKGDNITLMMNTGK 88
           +ILL G+NI +++  G 
Sbjct: 66 DQILLNGNNIAILVPGGS 83