Miyakogusa Predicted Gene

Lj4g3v1220440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1220440.1 Non Chatacterized Hit- tr|I1MV42|I1MV42_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.30449
PE,70.83,1e-16,seg,NULL,CUFF.48666.1
         (68 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g15370.2                                                        60   6e-10
Glyma17g15370.1                                                        60   6e-10
Glyma05g04980.1                                                        58   2e-09

>Glyma17g15370.2 
          Length = 237

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1  MATTPA--PVKSQHLHNFSLPLLKWGATATPNTSNT-NHHHRSRR-TXXXXXXXXXXXXX 56
          MAT PA  PVKSQ LHNF+LP LKWGA+   NT+ T  HHHR RR +             
Sbjct: 1  MATAPAHAPVKSQPLHNFALPFLKWGASGKNNTTTTAAHHHRFRRPSDHASEPDSSDPDS 60

Query: 57 XXXRVGSRTARN 68
             R+GSRTARN
Sbjct: 61 RPHRLGSRTARN 72


>Glyma17g15370.1 
          Length = 237

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1  MATTPA--PVKSQHLHNFSLPLLKWGATATPNTSNT-NHHHRSRR-TXXXXXXXXXXXXX 56
          MAT PA  PVKSQ LHNF+LP LKWGA+   NT+ T  HHHR RR +             
Sbjct: 1  MATAPAHAPVKSQPLHNFALPFLKWGASGKNNTTTTAAHHHRFRRPSDHASEPDSSDPDS 60

Query: 57 XXXRVGSRTARN 68
             R+GSRTARN
Sbjct: 61 RPHRLGSRTARN 72


>Glyma05g04980.1 
          Length = 283

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 8  VKSQHLHNFSLPLLKWGATATPNTSNTNHHHRSRR-TXXXXXXXXXXXXXXXXRVGSRTA 66
          VKSQ LHNF+LP LKWGA+   NT+N  HHHR RR +                R+GSRTA
Sbjct: 16 VKSQPLHNFALPFLKWGASGKNNTTNAAHHHRFRRPSDHASEPDSSDPDSRPHRLGSRTA 75

Query: 67 RN 68
          RN
Sbjct: 76 RN 77