Miyakogusa Predicted Gene

Lj4g3v1212310.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1212310.2 Non Chatacterized Hit- tr|I1MV77|I1MV77_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.21664
PE,85.27,0,alpha/beta knot,NULL; SpoU_methylase,tRNA/rRNA
methyltransferase, SpoU; 23S RRNA METHYLTRANSFERASE,N,CUFF.48635.2
         (404 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g15760.1                                                       679   0.0  
Glyma08g26320.1                                                        52   1e-06

>Glyma17g15760.1 
          Length = 787

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/414 (80%), Positives = 355/414 (85%), Gaps = 11/414 (2%)

Query: 2   QALSSYVFIAANVILHSSKDVQPRHLDELFPPLVPLLTSHHHSLRGFTQLLVYQILHKLF 61
           QALSSYVFIAANVIL+SSKDVQ  HL+ELFPPLVPLLTSHHHSLRGFTQLL YQILHKLF
Sbjct: 374 QALSSYVFIAANVILNSSKDVQSSHLNELFPPLVPLLTSHHHSLRGFTQLLAYQILHKLF 433

Query: 62  PLLNDGSSEILPLEKRCLVDLKLYLARNSDCARLRASMEGYLDAYNPNSSVTPAGIFVNR 121
           PLLN GSSE+LPLEKRC VDLK YLARNSDCARLR SMEGYLDAY+PNSSVTPAGIF+NR
Sbjct: 434 PLLNYGSSEMLPLEKRCFVDLKTYLARNSDCARLRTSMEGYLDAYDPNSSVTPAGIFINR 493

Query: 122 VE-----------EDNFECVPTSLMEQVLKFLNDVREDLRCSMAKDVVTLRNETLKSYGD 170
           VE           ED FECVPTSLMEQVLKFLND REDLRCSMAKDVVT+RNETL   GD
Sbjct: 494 VEICLFSLFWCVKEDGFECVPTSLMEQVLKFLNDAREDLRCSMAKDVVTIRNETLNFNGD 553

Query: 171 TNCMKNVSGDTEGIVLKDMSSDFQKKVTLAKHNKGDNEAGFLYSNDETYRKMAEIEXXXX 230
            NC++N+SG  EG +LKDMSSDFQKKVT  KH+KG NEAGFLY NDETY+K+AEIE    
Sbjct: 554 KNCIENLSGGIEGTMLKDMSSDFQKKVTFTKHDKGGNEAGFLYGNDETYKKLAEIERDDL 613

Query: 231 XXXXXXXXXXXXXXXXXASRQNCILVASLLDRIPNLAGLARSCEVFGASGLAIADKNIIS 290
                            ASRQN ILVASLLDRIPNLAGLAR+CEVF ASGLAIAD  II+
Sbjct: 614 LLDQLLQSRRSSLDQQKASRQNFILVASLLDRIPNLAGLARTCEVFRASGLAIADTKIIN 673

Query: 291 DKQFQLISVTAEKWVPIIELPVDSIKAYLQKKKREGYSILGLEQTANSVALDQYVFPQKM 350
           DKQFQLISVTAEKWVPIIE+PVDSIK YLQKKK+EG+SILGLEQTANSV LDQY+FP+KM
Sbjct: 674 DKQFQLISVTAEKWVPIIEVPVDSIKIYLQKKKKEGFSILGLEQTANSVPLDQYIFPKKM 733

Query: 351 VLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRSR 404
           VLVLGREKEGIPVDIIHILDACIEIPQ GVVRSLNVHVSGAIALWEYTRQQRS+
Sbjct: 734 VLVLGREKEGIPVDIIHILDACIEIPQFGVVRSLNVHVSGAIALWEYTRQQRSQ 787


>Glyma08g26320.1 
          Length = 322

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 8/145 (5%)

Query: 253 CILVASLLDRIPNLAGLARSCEVFGASGLAIADKNIISDKQFQ---LISVTAEKWVPIIE 309
           C++V  L D   N++   RS +  G   + +   +  ++K+++    +S+ AEKW+ I E
Sbjct: 130 CLVVEGLCD-FGNVSATFRSADALGVQSVHVVSCD--ANKRYKDNRHVSMGAEKWLDI-E 185

Query: 310 LPVDSIKAYLQKKKREGYSILGLEQTANSVALDQYVFPQKMVLVLGREKEGIPVDIIHIL 369
           L  DS K   +  K  GY I       ++V++    +     +V+G E  GI  + + + 
Sbjct: 186 L-WDSTKECFKMLKSRGYRIATTHVGMDAVSIHDLDWSCPTAIVVGNENRGISDEALELS 244

Query: 370 DACIEIPQLGVVRSLNVHVSGAIAL 394
           D    IP  G+V S NV V+  I +
Sbjct: 245 DLHCSIPMAGMVDSFNVSVAAGILM 269