Miyakogusa Predicted Gene

Lj4g3v1140610.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1140610.3 tr|A9RPY1|A9RPY1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_68989
,35.29,1e-18,no description,NULL; UBIQUITIN_2,Ubiquitin supergroup;
Ubiquitin-like,NULL; seg,NULL,CUFF.48543.3
         (170 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g16450.1                                                       258   2e-69
Glyma05g23880.1                                                       249   7e-67

>Glyma17g16450.1 
          Length = 224

 Score =  258 bits (659), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/167 (75%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 4   IVQEHESEKKVEIILKTIGPARPSRLLVPSSIKVRDLRRLIASNDHLPIDNLSLILRGTA 63
           +++EH+SEK VEI+LKTIGPARPSRLLV SSIKVRDLRRLIA ND+L IDNLSLILRG+A
Sbjct: 8   VMEEHDSEK-VEIVLKTIGPARPSRLLVSSSIKVRDLRRLIAGNDNLQIDNLSLILRGSA 66

Query: 64  LCDEKNGEDIRVELNDGDCLIIAVKPKPPVKAGFXXXXXXXXLKFQLPRTSSRWKKRLYS 123
           L D KNG+D+ ++LNDGDCLI+AVKPKPPVK G+        LKF+LP++SS WKKRLY+
Sbjct: 67  LYDMKNGDDVYIQLNDGDCLIVAVKPKPPVKDGYDNDDEDEDLKFRLPQSSSWWKKRLYT 126

Query: 124 FLRDNLKLPDILLMAIFTLSLRAWIFIIMWFILAPVAHRWDLGPLYV 170
           FL DNLKLPDILLM IFTLSL+AW+ II+WFILAPVAHRWDLGPLY+
Sbjct: 127 FLHDNLKLPDILLMVIFTLSLKAWLLIILWFILAPVAHRWDLGPLYI 173


>Glyma05g23880.1 
          Length = 224

 Score =  249 bits (637), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 124/167 (74%), Positives = 144/167 (86%), Gaps = 1/167 (0%)

Query: 4   IVQEHESEKKVEIILKTIGPARPSRLLVPSSIKVRDLRRLIASNDHLPIDNLSLILRGTA 63
           +++EH+SEK VEI+LKTIGPARPSRLLVPSSIKV DLRRLIA N++L I NLSLILRG+A
Sbjct: 8   VMEEHDSEK-VEIVLKTIGPARPSRLLVPSSIKVCDLRRLIARNENLQIYNLSLILRGSA 66

Query: 64  LCDEKNGEDIRVELNDGDCLIIAVKPKPPVKAGFXXXXXXXXLKFQLPRTSSRWKKRLYS 123
           L D KNG+D+ ++LNDGDCLI+AVKP PPVK G+        LKF+LP +SS WKKRLYS
Sbjct: 67  LYDTKNGDDVYIQLNDGDCLIVAVKPMPPVKDGYDNDDEDEDLKFRLPHSSSWWKKRLYS 126

Query: 124 FLRDNLKLPDILLMAIFTLSLRAWIFIIMWFILAPVAHRWDLGPLYV 170
           FL DNLKLPDILLM IFTLSL+AW+ II+WFILAPVAHRWDLGPLY+
Sbjct: 127 FLHDNLKLPDILLMVIFTLSLKAWLLIILWFILAPVAHRWDLGPLYI 173