Miyakogusa Predicted Gene

Lj4g3v1107610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1107610.1 Non Chatacterized Hit- tr|B9RV23|B9RV23_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,32,7e-16,zf-CCCH,Zinc finger, CCCH-type; no description,NULL; ZINC
FINGER (CCCH-TYPE) FAMILY PROTEIN,NULL; CC,CUFF.48463.1
         (382 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g10610.1                                                       445   e-125
Glyma05g08450.1                                                       174   1e-43
Glyma08g36540.2                                                       150   2e-36
Glyma17g12560.1                                                       143   3e-34
Glyma08g36540.1                                                       139   7e-33
Glyma10g41530.1                                                        50   5e-06
Glyma20g25710.1                                                        49   7e-06

>Glyma01g10610.1 
          Length = 346

 Score =  445 bits (1144), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/389 (60%), Positives = 253/389 (65%), Gaps = 50/389 (12%)

Query: 1   MDYGRDGNVVQIITTXXXXXXXXXXXXXDSWPGDQADWATEDEYRYWN-----GNEDTAP 55
           MD+ RDGNVVQIIT              +SW GDQADWATEDEYR+WN     G+ +T P
Sbjct: 1   MDFARDGNVVQIITGGGGGGGGG-----ESWSGDQADWATEDEYRFWNNNNSGGDSETTP 55

Query: 56  SNGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGKMFFKTKLCCKFRAGTCPYV 115
           SN +                                  IGKMFFKTKLCCKFRAGTCPY+
Sbjct: 56  SNSNYEGRSSEPPSKKSRNSSQEGSSSNRSKA------IGKMFFKTKLCCKFRAGTCPYI 109

Query: 116 TNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEFQIPTIGS--YAGDVSQRSY 173
           TNCNFAHSIEELRRPPPNWQEIVAAHEEEKA           IPT+GS  ++G++ QRSY
Sbjct: 110 TNCNFAHSIEELRRPPPNWQEIVAAHEEEKA-----------IPTVGSTTFSGEMMQRSY 158

Query: 174 KGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLXXXXXXXXXXXXXXXXXXXXXX 233
           KGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISL                      
Sbjct: 159 KGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGVGGGASGG 218

Query: 234 XXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHR 293
                                   KPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHR
Sbjct: 219 NGGANAAGNGPNS-----------KPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHR 267

Query: 294 YGGGLMEGESRDTASAIAADTKQGVPSKTLADNVVASATPIAHSDIYHIGVPSQRPSIVL 353
           YGGGLMEGE+RD ASA+A DT +GVPSK  ADNVVA+ T +AHSD+YHIGVPSQRPS + 
Sbjct: 268 YGGGLMEGENRDAASAVAGDTNKGVPSKASADNVVAAVTLVAHSDVYHIGVPSQRPSSM- 326

Query: 354 QRPGQRTLQKWKGPDKISRIYGDWIDDIE 382
                    KWKGPDKISRIYGDWIDDIE
Sbjct: 327 ---------KWKGPDKISRIYGDWIDDIE 346


>Glyma05g08450.1 
          Length = 345

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 146/295 (49%), Gaps = 51/295 (17%)

Query: 97  MFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEF 156
           +FFKT++C KFRAG C    NCNFAH +E++R+PPPNWQE+V    EE+           
Sbjct: 82  IFFKTRICAKFRAGACRNGENCNFAHGLEDMRQPPPNWQELVGLRNEERP---------- 131

Query: 157 QIPTIGSYAGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLH-------DEQSKNRESVAI 209
             PT+G +  D  +  +K + CKK+Y  E CPYGD C+FLH       D+  + RES AI
Sbjct: 132 --PTMGDWDDD-QKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFRDDSVRYRESTAI 188

Query: 210 SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNK 269
           S+                                              K + WKT++C K
Sbjct: 189 SI-------------GTNGSPKSYGDASNNLESNRAVNTGLNVFRGNVKSTYWKTKLCIK 235

Query: 270 WEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASAIAADTKQGVPSKTLADNVVA 329
           +E TG+CPFG+ CHFAHG  EL +  GG  E E      AI   TK  +P+   A +V +
Sbjct: 236 FETTGHCPFGDDCHFAHGQAEL-QVPGGRTEAE---IPGAIPISTKATIPTLPRATSVSS 291

Query: 330 SATPIAHSDIYHIGVPSQRPSIVL---QRPGQRTLQKWKGPDKISRIYGDWIDDI 381
           +  P           PS R S++    +   ++ L KWKG  KI+RIYGDW+DD+
Sbjct: 292 NDAP-----------PSHRASVLPANEEDQDEKCLLKWKGHRKINRIYGDWLDDL 335


>Glyma08g36540.2 
          Length = 161

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 81/95 (85%), Gaps = 1/95 (1%)

Query: 289 TELHRYGGGLMEGESRDTASAIAADTKQGVPSKTLADNVVASATPIAHSDIYHIGVPSQR 348
           TELHRYGGGLMEGE+RD AS +A+DT +G PSK  ADNVVA+ T  A SD+YHIGVPSQR
Sbjct: 67  TELHRYGGGLMEGENRDAASVVASDTNKGGPSKASADNVVAAVTLAAISDVYHIGVPSQR 126

Query: 349 P-SIVLQRPGQRTLQKWKGPDKISRIYGDWIDDIE 382
           P S+ +QRPGQR  QKWKGPDKISRIYGDWI+DIE
Sbjct: 127 PSSMAIQRPGQRAHQKWKGPDKISRIYGDWIEDIE 161


>Glyma17g12560.1 
          Length = 321

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 131/293 (44%), Gaps = 63/293 (21%)

Query: 97  MFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEF 156
           +FFKT++C KFR G C    NCNFAH +E++R+PPPNWQE+V    EE+           
Sbjct: 82  IFFKTRICAKFRVGACRNGENCNFAHGLEDMRQPPPNWQELVGLRGEERP---------- 131

Query: 157 QIPTIGSYAGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLH-------DEQSKNRESVAI 209
             P  G +  D  +  +K + CKK+Y  E CPYGD C+FLH       D+  + RES +I
Sbjct: 132 --PMAGDWDDD-QKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFRDDSVRYRESTSI 188

Query: 210 SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNK 269
           S+                                              K + WKT++C K
Sbjct: 189 SI-------------GTNGSPKSYGDASNNLESNRAVNTGLNVFRGNVKSTYWKTKLCIK 235

Query: 270 WEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASAIAADTKQGVPSKTLADNV-V 328
           +E TG+CPFG+ CHFAHG                            Q V +  L   + +
Sbjct: 236 FETTGHCPFGDDCHFAHG----------------------------QAVITLCLCLRICL 267

Query: 329 ASATPIAHSDIYHIGVPSQRPSIVLQRPGQRTLQKWKGPDKISRIYGDWIDDI 381
                 A  +   I + S  P+   +R  ++ L KWKG  KI+RIYGDW+DD+
Sbjct: 268 GFLINPAARNFSLIEIASVPPANEKER-DKKYLLKWKGHKKINRIYGDWLDDL 319


>Glyma08g36540.1 
          Length = 183

 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 76/90 (84%), Gaps = 1/90 (1%)

Query: 294 YGGGLMEGESRDTASAIAADTKQGVPSKTLADNVVASATPIAHSDIYHIGVPSQRP-SIV 352
           YGGGLMEGE+RD AS +A+DT +G PSK  ADNVVA+ T  A SD+YHIGVPSQRP S+ 
Sbjct: 94  YGGGLMEGENRDAASVVASDTNKGGPSKASADNVVAAVTLAAISDVYHIGVPSQRPSSMA 153

Query: 353 LQRPGQRTLQKWKGPDKISRIYGDWIDDIE 382
           +QRPGQR  QKWKGPDKISRIYGDWI+DIE
Sbjct: 154 IQRPGQRAHQKWKGPDKISRIYGDWIEDIE 183



 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 38/63 (60%), Gaps = 14/63 (22%)

Query: 1  MDYGRDGNVVQIITTXXXXXXXXXXXXXDSWPGDQADWATEDEYRYW------NGNEDTA 54
          MDY RDGNVVQIIT              +SW GDQADWATEDEYR+W       G+ +T 
Sbjct: 1  MDYARDGNVVQIITGGGGGG--------ESWSGDQADWATEDEYRFWNNNNNNGGDSETT 52

Query: 55 PSN 57
          PSN
Sbjct: 53 PSN 55


>Glyma10g41530.1 
          Length = 285

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 262 WKTRICNKWEMTGYCPFGNKCHFAHGATEL 291
           +KT +CNKW+ TG CP+G+ C FAHG  EL
Sbjct: 201 FKTELCNKWQETGTCPYGDHCQFAHGIGEL 230


>Glyma20g25710.1 
          Length = 305

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 262 WKTRICNKWEMTGYCPFGNKCHFAHGATEL 291
           +KT +CNKW+ TG CP+G+ C FAHG  EL
Sbjct: 221 FKTELCNKWQETGTCPYGDHCQFAHGIGEL 250