Miyakogusa Predicted Gene

Lj4g3v1037650.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1037650.2 tr|G7LC44|G7LC44_MEDTR DNA-(Apurinic or
apyrimidinic site) lyase OS=Medicago truncatula
GN=MTR_8g075,78.44,0,DNase
I-like,Endonuclease/exonuclease/phosphatase; SUBFAMILY NOT NAMED,NULL;
AP ENDONUCLEASE,Exodeox,CUFF.48310.2
         (615 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g05430.1                                                       952   0.0  
Glyma16g23850.1                                                       572   e-163
Glyma02g34700.1                                                        86   1e-16

>Glyma02g05430.1 
          Length = 566

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/622 (76%), Positives = 513/622 (82%), Gaps = 63/622 (10%)

Query: 1   MKIVTYNVNGLRQRIAQFGSLRNLLNSFDADIICFQETKLRRQDLTADLVMADGYESFFS 60
           MKIV+YNVNGLRQRIAQFGSLRNLLNSFDADIICFQETKLRRQ++TADLVMADGYESFFS
Sbjct: 1   MKIVSYNVNGLRQRIAQFGSLRNLLNSFDADIICFQETKLRRQEVTADLVMADGYESFFS 60

Query: 61  CTRTSDKGRTGYSGVITFCRVKSAFSSNEVALPLAAEEGFTGLMGDSQTCKANLPFSMDD 120
           CTRTS KGRTGYSGVITFCRVKSAFSSNEV LPLAAEEGFTGL+G+SQT    LPF M+D
Sbjct: 61  CTRTSQKGRTGYSGVITFCRVKSAFSSNEVVLPLAAEEGFTGLLGNSQTSNDKLPFLMED 120

Query: 121 LEEFSKDELLSVDSEGRCIITDHSHFVLFNIYGPRAGGDDKERIQFKQNFYKILQKRWET 180
           LEEFSKDELLS+DSEGRCIITDH+HFVLFN+YGPRAGGDD ERIQFKQ FY+ILQKRWE+
Sbjct: 121 LEEFSKDELLSLDSEGRCIITDHTHFVLFNLYGPRAGGDDTERIQFKQKFYRILQKRWES 180

Query: 181 LLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRRWFKSMLIENEGRFSDVFRAKHPN 240
           LLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFR+WFKSMLIEN GRFSDVFRAKHP+
Sbjct: 181 LLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRKWFKSMLIENGGRFSDVFRAKHPD 240

Query: 241 KTEAYTCWAQNTGAEVFNFGSRIDHILCAGSCLHESDDLKCHSFIRCHVMDCDILTEYKR 300
           + EAYTCW+QNTGAEVFNFGSRIDHIL AGSCLHE DDL+CHSFIRCHV +CDILT+YKR
Sbjct: 241 RREAYTCWSQNTGAEVFNFGSRIDHILFAGSCLHELDDLQCHSFIRCHVKECDILTQYKR 300

Query: 301 CKPESTLSAHRWKGGRSIKLEGSDHAPVYMTLLEIPEVSLHSTPFLSARYVPMVHGIQQT 360
           CKPESTL   RWKGG S+KLEGSDHAPV M+L EIP+VSLHSTP LSARYVPMVHGIQQT
Sbjct: 301 CKPESTL---RWKGGHSVKLEGSDHAPVLMSLHEIPDVSLHSTPSLSARYVPMVHGIQQT 357

Query: 361 LVSMLVKRRVSEQTKSCEMVNEDISMGSTYESIEPTNQTDSSTSECHFPSSQDSVCSILE 420
           LVS+L+KR+VSE  KSCEM  EDI+M                            V SIL+
Sbjct: 358 LVSVLMKRQVSELMKSCEMAQEDIAM---------------------------DVSSILK 390

Query: 421 SKELSRGSSQEAAISKSGSGYEKSMPRKCNESKKKARNNQGSQLSLRSFFQKSTNLDNG- 479
             +LS GSSQE+ +SKSGS  +KS  R+CN S KKARN Q SQLSLRSFFQKSTNLD G 
Sbjct: 391 PNKLSGGSSQES-VSKSGSENKKSTTRQCNRSNKKARNGQWSQLSLRSFFQKSTNLDKGS 449

Query: 480 -----VNNSCTDHSNN-QAEPSQPDPHLRETSTAIDHSSSPKQCEVNTDACDLDLAELND 533
                VN+SCTD+SNN QAEPSQP P L+E  T   H+                      
Sbjct: 450 SIKEVVNDSCTDYSNNNQAEPSQPSPRLQEIPTVCAHNG--------------------- 488

Query: 534 SSRKEEKSNVASLEWQRIQQMMQNSIPLCKGHKERCIARVVKKQGSNFGRRFYVCARAEG 593
               +EKSNVASLEWQRI+Q+MQNSIP+CKGHKE CIARVVKKQG NFGRRFYVCARAEG
Sbjct: 489 ----KEKSNVASLEWQRIKQLMQNSIPICKGHKEPCIARVVKKQGPNFGRRFYVCARAEG 544

Query: 594 PASNPEANCGYFKWATSKSRNK 615
           PASNPEANCGYFKWA+SKSRNK
Sbjct: 545 PASNPEANCGYFKWASSKSRNK 566


>Glyma16g23850.1 
          Length = 482

 Score =  572 bits (1475), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 336/627 (53%), Positives = 383/627 (61%), Gaps = 157/627 (25%)

Query: 1   MKIVTYNVNGLRQRIAQFGSLRNLLNSFDADIICFQETKLRRQDLTADLVMADGYESFFS 60
           MKIV+YNVNGLRQRIAQFGSLRNLLNSFDADI+CFQET+LRRQ++TADLVMA GYESFFS
Sbjct: 1   MKIVSYNVNGLRQRIAQFGSLRNLLNSFDADIVCFQETELRRQEVTADLVMAGGYESFFS 60

Query: 61  CTRTSDKGRTGYSGVITFCRVKSAFSSNEVALPLAAEEGFTGLMGDSQTCKANLPFSMDD 120
           CTRTS KGRTGYSGVITFCRVKSAF SNEV L LA +EGFT                   
Sbjct: 61  CTRTSQKGRTGYSGVITFCRVKSAFLSNEVVLQLAEKEGFT------------------- 101

Query: 121 LEEFSKDELLSVDSEGRCIITDHSHFVLFNIYGPRAGGDDKERIQFKQNFYKILQKRWET 180
                 DELLS+DSEGRCIITDH+HF         AGGDD ERIQFKQ FY+ILQKRW +
Sbjct: 102 ------DELLSLDSEGRCIITDHTHF---------AGGDDTERIQFKQIFYRILQKRWGS 146

Query: 181 LLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRRWFKSMLIENEGRFSDVFRAKHPN 240
           LLHQGRRIFVV DLNIAPFAIDRCD GPDFE NE                     AKHP+
Sbjct: 147 LLHQGRRIFVVVDLNIAPFAIDRCDIGPDFEKNE---------------------AKHPD 185

Query: 241 KTEAYTCWAQNTGAEVFNFGSRIDHILCAGSCLHESDDLKCHSFIRCHVMDCDILTEYKR 300
           +   Y  W            + + H +     L    +L    F+    M+      YKR
Sbjct: 186 R---YGSWKGKP--------TPVGHKIQVLKYLTSEVELIIFCFLVHANMNWTCNAIYKR 234

Query: 301 CKPESTLSAHRWKGGRSIKLEGSDHAPVYMTLLEIPEVSLH------STPFLSARYVPMV 354
           CKPESTL   RWKGGRS+KLEGSDHAPV+M+L EIP++  H      ++ + +   + M 
Sbjct: 235 CKPESTL---RWKGGRSVKLEGSDHAPVFMSLHEIPDICSHGSWHTANSSYKTLFLLWMR 291

Query: 355 HGIQ-QTLVSMLVKRRVSEQTKSCEMVNEDISMGSTYESIEPTNQTDSSTSECHFPSSQD 413
             +   +L+ +L+KR+VS++ KS EM  EDI+M ST E  EP                  
Sbjct: 292 FSVHMMSLLMLLMKRQVSKKMKSFEMAQEDIAMDSTCERKEPV----------------- 334

Query: 414 SVCSILESKELSRGSSQEAAISKSGSGYEKSMPRKCNESKKKARNNQGSQLSLRSFFQKS 473
                     L   SSQ + +S                              LRSFFQKS
Sbjct: 335 ---------PLRTKSSQWSQLS------------------------------LRSFFQKS 355

Query: 474 TNLDNG-----VNNSCTDHSNNQAEPSQPDPHLRETSTAIDHSSSPKQCEVNTDACDLDL 528
            NLDNG     VN+SCTD+SNNQAEPSQP P L+ET T                    DL
Sbjct: 356 ANLDNGSSVKVVNDSCTDYSNNQAEPSQPSPRLQETPT--------------------DL 395

Query: 529 AELNDSSRKEEKSNVASLEWQRIQQMMQNSIPLCKGHKERCIARVVKKQGSNFGRRFYVC 588
           A  N SS KEE SNVASLEWQRIQQ+MQNSIP+CKG+KE CIARVVKKQG NFGRRFYVC
Sbjct: 396 AGPNGSSTKEEMSNVASLEWQRIQQLMQNSIPICKGYKEPCIARVVKKQGPNFGRRFYVC 455

Query: 589 ARAEGPASNPEANCGYFKWATSKSRNK 615
           A AEGPASN EANCGYFKWA+SKS+NK
Sbjct: 456 AHAEGPASNLEANCGYFKWASSKSKNK 482


>Glyma02g34700.1 
          Length = 512

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 129/302 (42%), Gaps = 60/302 (19%)

Query: 1   MKIVTYNVNGLRQ--RIAQFGSLRNLLNSFDADIICFQETKLRRQDL-TADLVMADGY-E 56
           +K++++NVNGLR   ++  F +L+ L    D D++C QETKL+ +D+      + DGY  
Sbjct: 252 VKLLSWNVNGLRALLKLEGFSALQ-LAQREDFDVLCLQETKLQEKDIEEIKQRLIDGYAN 310

Query: 57  SFFSCTRTSDKGRTGYSGVITFCRVKSAFSSNEVALPLAAEEGFTGLMGDSQTCKANLPF 116
           SF++C+ +    + GYSG     R+K          PL+   G              +P 
Sbjct: 311 SFWTCSVS----KLGYSGTAIISRIK----------PLSVRYGL------------GIP- 343

Query: 117 SMDDLEEFSKDELLSVDSEGRCIITDHSHFVLFNIYGPRAGGDDKERIQFKQNFYKILQK 176
                           DSEGR +  +   F L   Y P + GD  +R+ ++   +     
Sbjct: 344 --------------DHDSEGRLVTAEFDTFYLICGYVPNS-GDGLKRLSYRVTEWDPSLS 388

Query: 177 RWETLLHQGRRIFVVGDLNIAPFAIDRCDAGPD-----FENNEFRRWFKSMLIENEGRFS 231
            +   L + + + + GDLN A   ID  +   +     F + E + + K+ L      F 
Sbjct: 389 NYLKELEKSKPVILTGDLNCAHEEIDIYNPAGNKRSAGFTDEERKSFAKNFLSRG---FV 445

Query: 232 DVFRAKHPNKTEAYTCWAQNTGAEVFNFGSRIDHILCAGSCLHESDDLKCHSFIRCHVMD 291
           D FR +HP     YT W    G   FN G R+D+ L + S   +  D    S+I   V  
Sbjct: 446 DTFRRQHPGVI-GYTYWGYRHGGRKFNRGWRLDYFLVSESIADKVHD----SYILPDVTG 500

Query: 292 CD 293
            D
Sbjct: 501 SD 502