Miyakogusa Predicted Gene

Lj4g3v0877830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0877830.1 tr|I1L9S4|I1L9S4_SOYBN DNA topoisomerase 2
OS=Glycine max GN=Gma.48179 PE=3 SV=1,59.4,0,DNA_topoisoIV,DNA
topoisomerase, type IIA, subunit A/C-terminal; TOPISMRASEII,DNA
topoisomerase II, ,CUFF.48145.1
         (369 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g11610.1                                                       461   e-130
Glyma15g43170.1                                                       459   e-129
Glyma18g24230.1                                                        91   2e-18
Glyma09g21300.1                                                        63   4e-10

>Glyma10g11610.1 
          Length = 1490

 Score =  461 bits (1187), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/367 (59%), Positives = 281/367 (76%), Gaps = 3/367 (0%)

Query: 1   MESFIYGRVMFMADQDYDGSHIKGLLINFFYMLSPSLLRIPYFLSELITPIIRAFHCNGI 60
           ++S  YG +M MADQD+DGSHIKGLLINF +   PSLL++P F+ E  TPIIRAFH NG 
Sbjct: 521 VKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSNGT 580

Query: 61  QKLSFYSYPEYEKWWKNWGNS--DWRIKYYKGLGSFTHEEGKEFFQNVEIQRKYFVWRND 118
            KLSFYS PEYE W ++ GN+   W+IKYYKGLG+ T +EG+E+FQ+++  +K FVW ++
Sbjct: 581 -KLSFYSMPEYESWRESLGNNANGWKIKYYKGLGTSTPQEGREYFQDLDKHKKDFVWDDE 639

Query: 119 EDLDAINIAFSKSKTRERRGLMLKFKSSDYRDYTDLSICYKDFLQKEFILYSMASVRRCI 178
           +D  AI +AFSK K  +R+  +  F+    RD+    I Y+DF+ KE ILYS A ++R I
Sbjct: 640 QDGGAIEMAFSKKKAEDRKIWIRNFEPGTCRDHMAKYINYRDFVNKELILYSRADLQRSI 699

Query: 179 PSLIDGQKPSQRKILYGAFKRELFTEIRVDKLIGYVAEHSAYHHDESSLATTLMRMARDY 238
           PS++DG KP QRKIL+ +FK++LF EI+V + IGYV+EHSAYHH E SLA+T++ MA+D+
Sbjct: 700 PSMVDGLKPGQRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHGEQSLASTIINMAQDF 759

Query: 239 VGSMNINLLMANGQFGTHIQGGKDHASPRYIYTELNPISRFLFPEIDNKLLKYLNEDGIS 298
           VGS NINLL  NGQFGT   GGKDHAS RYIYTEL+ I+R +F E D+KLL+YLNEDG  
Sbjct: 760 VGSNNINLLKPNGQFGTRNLGGKDHASARYIYTELSTITRCIFHEDDDKLLEYLNEDGRC 819

Query: 299 VEPEWYLPIIPLVLVNGVSGIATGWNCSIPCYNPKDIIANIKRFLNDDKLQPMVPWYKGF 358
           +EP WY+P+IPLVLVNG  GI TGW+  IP YNP+DIIAN++R L+ + + PM PWYKGF
Sbjct: 820 IEPTWYIPVIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLSGETMVPMDPWYKGF 879

Query: 359 KGTIDKS 365
           KGTI++S
Sbjct: 880 KGTIERS 886


>Glyma15g43170.1 
          Length = 1472

 Score =  459 bits (1180), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/367 (58%), Positives = 280/367 (76%), Gaps = 3/367 (0%)

Query: 1   MESFIYGRVMFMADQDYDGSHIKGLLINFFYMLSPSLLRIPYFLSELITPIIRAFHCNGI 60
           ++S  YG +M MADQD+DGSHIKGLLINF +   PSLL++P F+ E  TPIIRAFH NG 
Sbjct: 517 VKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSNGT 576

Query: 61  QKLSFYSYPEYEKWWKNWGN--SDWRIKYYKGLGSFTHEEGKEFFQNVEIQRKYFVWRND 118
            KLSFYS PEYE W ++ GN  + W+IKYYKGLG+ T +EG+E+F++++  +K FVW ++
Sbjct: 577 -KLSFYSMPEYESWRESLGNNATGWKIKYYKGLGTSTPQEGREYFRDLDKHKKDFVWDDE 635

Query: 119 EDLDAINIAFSKSKTRERRGLMLKFKSSDYRDYTDLSICYKDFLQKEFILYSMASVRRCI 178
           +D  AI +AFSK K  +R+  +  F+    RD+    I Y+DF+ KE ILYS A ++R I
Sbjct: 636 QDGGAIEMAFSKKKAEDRKIWIRNFEPGTCRDHMAKYINYRDFVNKELILYSRADLQRSI 695

Query: 179 PSLIDGQKPSQRKILYGAFKRELFTEIRVDKLIGYVAEHSAYHHDESSLATTLMRMARDY 238
           PS++DG KP QRKIL+ +FK++L  EI+V + IGYV+EHSAYHH E SLA+T++ MA+D+
Sbjct: 696 PSMVDGLKPGQRKILFCSFKKKLSKEIKVGQFIGYVSEHSAYHHGEQSLASTIINMAQDF 755

Query: 239 VGSMNINLLMANGQFGTHIQGGKDHASPRYIYTELNPISRFLFPEIDNKLLKYLNEDGIS 298
           VGS NINLL  NGQFGT   GGKDHAS RYIYTELN I+R +F E D+KLL+YLNEDG  
Sbjct: 756 VGSNNINLLKPNGQFGTRNLGGKDHASARYIYTELNTITRCIFHEDDDKLLEYLNEDGRC 815

Query: 299 VEPEWYLPIIPLVLVNGVSGIATGWNCSIPCYNPKDIIANIKRFLNDDKLQPMVPWYKGF 358
           +EP WY+P+IPLVLVNG  GI TGW+  IP YNP+DIIAN++R L+ + + PM PWYKGF
Sbjct: 816 IEPNWYIPVIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLSGETMVPMDPWYKGF 875

Query: 359 KGTIDKS 365
           KGTI++S
Sbjct: 876 KGTIERS 882


>Glyma18g24230.1 
          Length = 219

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 50/67 (74%)

Query: 299 VEPEWYLPIIPLVLVNGVSGIATGWNCSIPCYNPKDIIANIKRFLNDDKLQPMVPWYKGF 358
           V P  Y+P+IPLVLVNG   I TG +  IP YNP+DIIAN++R L+ + + PM PWYKGF
Sbjct: 1   VRPHRYIPVIPLVLVNGSQRIGTGCSSYIPNYNPRDIIANVRRLLSRETMVPMDPWYKGF 60

Query: 359 KGTIDKS 365
           KGTI+ S
Sbjct: 61  KGTIETS 67


>Glyma09g21300.1 
          Length = 951

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 92/178 (51%), Gaps = 9/178 (5%)

Query: 164 KEFILYSMASVR-RCIPSLIDGQKPSQRKILYGAFKRELFTEIRVDKLIGYVAE-HSAYH 221
           + ++ Y+M+ +  R +P + DG KP  R+IL+   +  L ++    K    V E    +H
Sbjct: 102 EAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKCARVVGEVLGKFH 161

Query: 222 -HDESSLATTLMRMARDYVGSMNINLLMANGQFGTHIQGGKDHASPRYIYTELNPISR-F 279
            H ++++  +L+RMA+D+  S+   L+  +G FG+        A+ RY    L+ ++   
Sbjct: 162 PHGDTAVYDSLVRMAQDF--SLRSPLIQGHGNFGSI--DADPPAAMRYTECRLDDLTEAM 217

Query: 280 LFPEIDNKLLKYL-NEDGISVEPEWYLPIIPLVLVNGVSGIATGWNCSIPCYNPKDII 336
           L  +++   + ++ N D    EP      +P +L+NG SGIA G   +IP +N  +++
Sbjct: 218 LLTDLEQDTVDFVPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNLGEVV 275