Miyakogusa Predicted Gene

Lj4g3v0877650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0877650.1 tr|A9S0S4|A9S0S4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_122476,47.24,2e-18,WCOR413,Cold acclimation
WCOR413,gene.g53495.t1.1
         (136 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g25870.1                                                       228   1e-60
Glyma02g06850.1                                                       220   3e-58
Glyma12g05150.2                                                       177   2e-45
Glyma12g05150.1                                                       177   3e-45
Glyma11g13060.1                                                       177   4e-45
Glyma12g05150.4                                                       151   2e-37
Glyma11g13060.2                                                       150   4e-37
Glyma12g05150.3                                                       149   1e-36
Glyma07g20910.1                                                        51   4e-07

>Glyma16g25870.1 
          Length = 202

 Score =  228 bits (581), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/122 (90%), Positives = 117/122 (95%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           MLT+LLVPYIFFSFP SLFHFLRGEVGKWIAFIAVVLRLFF R+FPD LEIPGSMIL+LT
Sbjct: 75  MLTALLVPYIFFSFPESLFHFLRGEVGKWIAFIAVVLRLFFPRHFPDWLEIPGSMILILT 134

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           VAPD+FA R RNNW+G+AIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY
Sbjct: 135 VAPDIFAHRLRNNWIGLAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 194

Query: 121 PV 122
           P+
Sbjct: 195 PI 196


>Glyma02g06850.1 
          Length = 202

 Score =  220 bits (561), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 115/122 (94%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           MLT+LLVPYIFFSFP SLFHFLRGEVGKWIAFIAVVLRLFF R+FPD LEIPGSMIL+LT
Sbjct: 75  MLTALLVPYIFFSFPESLFHFLRGEVGKWIAFIAVVLRLFFPRHFPDWLEIPGSMILILT 134

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           VAPD+FA R RNNW+G+AIDLFIG YLLQ+HIRATGGF+NSFTQKHGISNTLGIL LIVY
Sbjct: 135 VAPDIFAHRLRNNWIGLAIDLFIGSYLLQQHIRATGGFKNSFTQKHGISNTLGILFLIVY 194

Query: 121 PV 122
           P+
Sbjct: 195 PI 196


>Glyma12g05150.2 
          Length = 168

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 102/123 (82%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           +LT+LL+PYIFFS P  +F   RGE+GKWIA +AVVLRLF  R+FPD LE+PG++ILL+ 
Sbjct: 39  ILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPDWLELPGALILLIV 98

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           VAP L A  FR+N VGV + L I CYLLQEHIRA+GGFRNSFT+ HGISN++GI+LL+VY
Sbjct: 99  VAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVY 158

Query: 121 PVW 123
           P+W
Sbjct: 159 PIW 161


>Glyma12g05150.1 
          Length = 198

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 102/123 (82%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           +LT+LL+PYIFFS P  +F   RGE+GKWIA +AVVLRLF  R+FPD LE+PG++ILL+ 
Sbjct: 69  ILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPDWLELPGALILLIV 128

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           VAP L A  FR+N VGV + L I CYLLQEHIRA+GGFRNSFT+ HGISN++GI+LL+VY
Sbjct: 129 VAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVY 188

Query: 121 PVW 123
           P+W
Sbjct: 189 PIW 191


>Glyma11g13060.1 
          Length = 186

 Score =  177 bits (448), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 102/123 (82%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           +LT+LL+PYIFFS P  +F   RGE+GKWIA +AVVLRLF  R+FPD LE+PG++ILL+ 
Sbjct: 57  ILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFIPRHFPDWLELPGALILLIV 116

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
           VAP L A  FR+N VGV + L I CYLLQEHIRA+GGFRNSFT+ HG+SN++GI+LL+VY
Sbjct: 117 VAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGVSNSIGIILLLVY 176

Query: 121 PVW 123
           P+W
Sbjct: 177 PIW 179


>Glyma12g05150.4 
          Length = 162

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 85/100 (85%)

Query: 24  GEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLTVAPDLFAQRFRNNWVGVAIDLFI 83
           GE+GKWIA +AVVLRLF  R+FPD LE+PG++ILL+ VAP L A  FR+N VGV + L I
Sbjct: 56  GELGKWIAAVAVVLRLFLPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLII 115

Query: 84  GCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVYPVW 123
            CYLLQEHIRA+GGFRNSFT+ HGISN++GI+LL+VYP+W
Sbjct: 116 ACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIW 155


>Glyma11g13060.2 
          Length = 150

 Score =  150 bits (379), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 85/100 (85%)

Query: 24  GEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLTVAPDLFAQRFRNNWVGVAIDLFI 83
           GE+GKWIA +AVVLRLF  R+FPD LE+PG++ILL+ VAP L A  FR+N VGV + L I
Sbjct: 44  GELGKWIAAVAVVLRLFIPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLII 103

Query: 84  GCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVYPVW 123
            CYLLQEHIRA+GGFRNSFT+ HG+SN++GI+LL+VYP+W
Sbjct: 104 ACYLLQEHIRASGGFRNSFTKAHGVSNSIGIILLLVYPIW 143


>Glyma12g05150.3 
          Length = 183

 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 89/123 (72%), Gaps = 15/123 (12%)

Query: 1   MLTSLLVPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLT 60
           +LT+LL+PYIFFS P  +F   RGE+GKWIA +AVVLRLF  R+FP              
Sbjct: 69  ILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFP-------------- 114

Query: 61  VAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFRNSFTQKHGISNTLGILLLIVY 120
            AP L A  FR+N VGV + L I CYLLQEHIRA+GGFRNSFT+ HGISN++GI+LL+VY
Sbjct: 115 -APSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVY 173

Query: 121 PVW 123
           P+W
Sbjct: 174 PIW 176


>Glyma07g20910.1 
          Length = 238

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 47  DLLEIPGSMILLLTVAPDLFAQRFRNNWVGVAIDLFIGCYLLQEHIRATGGFR------- 99
           D LE+P   ILL+  APD F   F  N VGV I L I C LLQ +I A  G R       
Sbjct: 126 DWLELPAVFILLIVAAPDFFTNTFIRNKVGVIICLIIACCLLQGNILAVCGIRIFLFIPC 185

Query: 100 NSFTQKHGISNTLGIL 115
           N   ++  I   +G++
Sbjct: 186 NLLRERENIGVAIGLV 201