Miyakogusa Predicted Gene

Lj4g3v0867490.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0867490.3 Non Chatacterized Hit- tr|E1ZDD1|E1ZDD1_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,30.9,0.000000003,seg,NULL; VACUOLAR PROTEIN
SORTING-ASSOCIATED PROTEIN (VPS13),Vacuolar protein sorting-associated
pr,CUFF.48146.3
         (951 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g25920.1                                                       727   0.0  
Glyma02g06890.2                                                       253   5e-67

>Glyma16g25920.1 
          Length = 2780

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/422 (82%), Positives = 376/422 (89%), Gaps = 10/422 (2%)

Query: 523  LLEHVTQEEDDNERKDFSPIVVAKLGNLHMITISNNHQKYNQFSIQYLNFDLKWKGAPFS 582
            + ++++ EEDDNE KDF+PIV+AKLGNLHMI+ISNNHQ YNQFS+QY+N +LKW GAPF+
Sbjct: 2224 ITKNLSSEEDDNESKDFTPIVIAKLGNLHMISISNNHQTYNQFSLQYINLELKWNGAPFA 2283

Query: 583  SMLRGHQLDYSESNDSAXXXXXXXXXXXXXXXQLKYSSIFLQPIDLNIDEETLMKIVSFW 642
            SMLR HQLDY +SNDS                Q +YSSIFLQPIDLN+DEETLMKI SFW
Sbjct: 2284 SMLRRHQLDYCDSNDSVLTVVFVLLASSSNVKQFRYSSIFLQPIDLNLDEETLMKIASFW 2343

Query: 643  RSSLSASESQRYYFDHFEVHPIKIIANFIPGEPRSSYSSAQEALRSLIHSVVKVPSIKSR 702
            R+SL+ SESQR+YFDHFE+HPIKIIANFIPGE RSSYSS QEALRSLIHSV+KVP IK+ 
Sbjct: 2344 RTSLNESESQRFYFDHFEIHPIKIIANFIPGESRSSYSSTQEALRSLIHSVIKVPPIKNM 2403

Query: 703  VVELNGVLITHALITMRELFIKCAQHYSWYTMRAIYIAKGSTLLPPEFVSIFDDLASSSL 762
            VVELNGVLITHALITMRELFIKCAQHYSWYTMRAIYIAKGS LLPP+FVSIFDDLASSSL
Sbjct: 2404 VVELNGVLITHALITMRELFIKCAQHYSWYTMRAIYIAKGSPLLPPDFVSIFDDLASSSL 2463

Query: 763  DVFFDPSRGLANFPGFTLGTFKLISKCIKGKGFSGTKRYFGDLGKT----------LRSA 812
            DVFFDPSRGLAN PGFTLGTFK+ISKCIKGKGFSGTKRYFGDLGKT          LRSA
Sbjct: 2464 DVFFDPSRGLANLPGFTLGTFKIISKCIKGKGFSGTKRYFGDLGKTHINQFMTGQQLRSA 2523

Query: 813  GSNIAFAAVAEISDSVLKGAEANGFDGLMSGFHQGILKLAMEPSFLGTALMEGGPDRKIL 872
            GSNIAFA VAEISDSVLKGAEANGF+GL+SGFHQGILKLAMEPS LGTALMEGGPDRKIL
Sbjct: 2524 GSNIAFAVVAEISDSVLKGAEANGFNGLVSGFHQGILKLAMEPSVLGTALMEGGPDRKIL 2583

Query: 873  LDQSPGVDELYIEGYIQAMLDTVYRQEYLRVRVIDNQVILKNLPPNHSLINEITNRVKEF 932
            LD+SPGVDELYIEGYIQAMLDTVYRQEYLRVRVIDNQVILKNLPPNHSLINEIT RVKEF
Sbjct: 2584 LDRSPGVDELYIEGYIQAMLDTVYRQEYLRVRVIDNQVILKNLPPNHSLINEITGRVKEF 2643

Query: 933  LV 934
            LV
Sbjct: 2644 LV 2645



 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/437 (77%), Positives = 364/437 (83%), Gaps = 17/437 (3%)

Query: 1    MTNLLHSEIDVLLSETGQPKLVEYDKIGKQATISCGSTVDFYANPELIYFTVNLXXXXXX 60
            MTNLLHS+IDV+LSET Q  L  YDKIGKQA ISCGSTVDFYANPE+IYFTV L      
Sbjct: 1116 MTNLLHSQIDVILSETDQSNLDGYDKIGKQAVISCGSTVDFYANPEVIYFTVTLTSNSSS 1175

Query: 61   XKPVNSGDCVKKLLKQNNDVQHVDIKLDLDGGNFSATLRLYRGNRGILEV---------- 110
             K VNSGDCVKK LK+NNDV H+DI LD DGG FSATLRLYRG+RG+LEV          
Sbjct: 1176 -KLVNSGDCVKKFLKKNNDVHHLDINLDFDGGKFSATLRLYRGSRGVLEVGTVTLVSCES 1234

Query: 111  ------VVFTSYSMKNDTASPIYVLATKRWPLSRVELDNLNSNIPSELGLFLPPKSTRSW 164
                  V+FTSYSMKNDT  PIYVL TKR PLSR+EL+NLN +IPS LGL LPPKS  SW
Sbjct: 1235 VGCMQAVIFTSYSMKNDTDFPIYVLETKRSPLSRIELENLNPSIPSALGLCLPPKSISSW 1294

Query: 165  FLKSEKVQLKLLEDHTSEALLDFGSLSGLTEISFKKEEGSGIKSVTKIGVSIGPSSGEIV 224
            FLKSE+V +KLL++HTSEALLD GSLSGLTEISF+KEEGSGIKSVTK+GVSIGPSSGEIV
Sbjct: 1295 FLKSERVLMKLLDNHTSEALLDLGSLSGLTEISFEKEEGSGIKSVTKLGVSIGPSSGEIV 1354

Query: 225  VPSQMVTLVPRYVICNESEERIIVRQCYFQDEEAGFVSIDSKQRVPLQLKEGLSKKREFS 284
            VPSQMVTLVPRYV+CNE EE I +RQCYFQDE AG +SI+SKQR+PLQLKEG    REFS
Sbjct: 1355 VPSQMVTLVPRYVVCNEYEECITIRQCYFQDEVAGVISINSKQRMPLQLKEGFKNTREFS 1414

Query: 285  VFEHFIRKHRFSSDNSLLYIQIQTNEPGLGWSGPVCIASLGHFFLKFRKETDEVKTLDNK 344
            +FEHFIRKHR  SDNSLLYIQIQ NE GLGWSGPVCIASLGHFFLKFRK+T+E    DNK
Sbjct: 1415 LFEHFIRKHRSKSDNSLLYIQIQLNEAGLGWSGPVCIASLGHFFLKFRKQTNEDTISDNK 1474

Query: 345  MTQFAAVHVVEEGSTLVLSFYKPPNLSLPYRIENCLHSLSITCYQKDSLVPEVLGPACSA 404
            MTQFAAVHVVEEGSTLV  FYKPPN SLPYRIENCLHSLSIT YQK  L PEVLGPACSA
Sbjct: 1475 MTQFAAVHVVEEGSTLVSRFYKPPNTSLPYRIENCLHSLSITYYQKGLLEPEVLGPACSA 1534

Query: 405  DYVWDDLTLPRKLVVRI 421
            DYVWDDLTLPR+L+  I
Sbjct: 1535 DYVWDDLTLPRRLLAAI 1551



 Score =  184 bits (466), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 90/123 (73%), Positives = 104/123 (84%), Gaps = 1/123 (0%)

Query: 409  DDLTLPRKLVVRINDSLQLREIKLDKVQAWRPFYKLGQQGVLAPRLLFDKGSRDQRVSFR 468
            +DL+L ++    + DSLQLREIKLDKV+AW+PF+KLGQQ VLAPRLL DK SRDQ + F 
Sbjct: 1761 NDLSLSQQSNT-LKDSLQLREIKLDKVRAWKPFHKLGQQRVLAPRLLLDKRSRDQMMGFS 1819

Query: 469  EPSGMEMEKVGFEIYAEGPTRVLRICEISDSFKRQTVHALCAKIQLRVSQFAVHLLEHVT 528
            E +G+EM KVG+EIYAEGPTRVLRICEISDSFKR TV  LCAKIQLR SQFAVHLLEHV 
Sbjct: 1820 EHNGLEMTKVGYEIYAEGPTRVLRICEISDSFKRDTVLDLCAKIQLRASQFAVHLLEHVK 1879

Query: 529  QEE 531
            Q++
Sbjct: 1880 QKQ 1882


>Glyma02g06890.2 
          Length = 302

 Score =  253 bits (647), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 128/145 (88%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 790 IKGKGFSGTKRYFGDLGKTLRSAGSNIAFAAVAEISDSVLKGAEANGFDGLMSGFHQGIL 849
           IKGKGFSGTKRYFGDLG TLRSAGSNIAFAAVAEISDSVLKGA        +SGF QGIL
Sbjct: 143 IKGKGFSGTKRYFGDLGTTLRSAGSNIAFAAVAEISDSVLKGA-VKELPPFVSGFQQGIL 201

Query: 850 KLAMEPSFLGTALMEGGPDRKILLDQSPGVDELYIEGYIQAMLDTVYRQEYLRVRVIDNQ 909
           KLAMEPS L TALMEGGPDRKILLD+SPGVDELYIEGYIQAMLD++YRQEYLRVRVIDNQ
Sbjct: 202 KLAMEPSVLRTALMEGGPDRKILLDRSPGVDELYIEGYIQAMLDSLYRQEYLRVRVIDNQ 261

Query: 910 VILKNLPPNHSLINEITNRVKEFLV 934
           VILKNLPPNHSLINEIT RVKEFLV
Sbjct: 262 VILKNLPPNHSLINEITGRVKEFLV 286