Miyakogusa Predicted Gene

Lj4g3v0867490.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0867490.2 Non Chatacterized Hit- tr|F6I7D8|F6I7D8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,61.06,0,seg,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
(VPS13),Vacuolar protein sorting-associated pr,CUFF.48146.2
         (1065 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g25920.1                                                       797   0.0  
Glyma02g06890.2                                                       254   3e-67

>Glyma16g25920.1 
          Length = 2780

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/533 (76%), Positives = 443/533 (83%), Gaps = 29/533 (5%)

Query: 19   YIKGGKAVRLSGIFDKLNYRVRKALFEKSVKCSFSTAHCTLKSEGVSVSKMHFLIQTIAR 78
            YIKGGKAVRLSGIF+KLNYRVRKALF KSVKCSFSTAHCT+KSEG           T+AR
Sbjct: 1032 YIKGGKAVRLSGIFNKLNYRVRKALFAKSVKCSFSTAHCTIKSEG-----------TVAR 1080

Query: 79   EVPIASPEKSAAVLKNENSTVSLLEQKEIFLLPTVRMTNLLHSEIDVLLSETGQPKLVEY 138
            ++P+A PEKSA   KNEN TVS+LEQKEI+LLPTVRMTNLLHS+IDV+LSET Q  L  Y
Sbjct: 1081 DIPVA-PEKSAVAFKNENPTVSVLEQKEIYLLPTVRMTNLLHSQIDVILSETDQSNLDGY 1139

Query: 139  DKIGKQATISCGSTVDFYANPELIYFTVNLXXXXXXXKPVNSGDCVKKLLKQNNDVQHVD 198
            DKIGKQA ISCGSTVDFYANPE+IYFTV L       K VNSGDCVKK LK+NNDV H+D
Sbjct: 1140 DKIGKQAVISCGSTVDFYANPEVIYFTVTLTSNSSS-KLVNSGDCVKKFLKKNNDVHHLD 1198

Query: 199  IKLDLDGGNFSATLRLYRGNRGILEV----------------VVFTSYSMKNDTASPIYV 242
            I LD DGG FSATLRLYRG+RG+LEV                V+FTSYSMKNDT  PIYV
Sbjct: 1199 INLDFDGGKFSATLRLYRGSRGVLEVGTVTLVSCESVGCMQAVIFTSYSMKNDTDFPIYV 1258

Query: 243  LATKRWPLSRVELDNLNSNIPSELGLFLPPKSTRSWFLKSEKVQLKLLEDHTSEALLDFG 302
            L TKR PLSR+EL+NLN +IPS LGL LPPKS  SWFLKSE+V +KLL++HTSEALLD G
Sbjct: 1259 LETKRSPLSRIELENLNPSIPSALGLCLPPKSISSWFLKSERVLMKLLDNHTSEALLDLG 1318

Query: 303  SLSGLTEISFKKEEGSGIKSVTKIGVSIGPSSGEIVVPSQMVTLVPRYVICNESEERIIV 362
            SLSGLTEISF+KEEGSGIKSVTK+GVSIGPSSGEIVVPSQMVTLVPRYV+CNE EE I +
Sbjct: 1319 SLSGLTEISFEKEEGSGIKSVTKLGVSIGPSSGEIVVPSQMVTLVPRYVVCNEYEECITI 1378

Query: 363  RQCYFQDEEAGFVSIDSKQRVPLQLKEGLSKKREFSVFEHFIRKHRFSSDNSLLYIQIQT 422
            RQCYFQDE AG +SI+SKQR+PLQLKEG    REFS+FEHFIRKHR  SDNSLLYIQIQ 
Sbjct: 1379 RQCYFQDEVAGVISINSKQRMPLQLKEGFKNTREFSLFEHFIRKHRSKSDNSLLYIQIQL 1438

Query: 423  NEPGLGWSGPVCIASLGHFFLKFRKETDEVKTLDNKMTQFAAVHVVEEGSTLVLSFYKPP 482
            NE GLGWSGPVCIASLGHFFLKFRK+T+E    DNKMTQFAAVHVVEEGSTLV  FYKPP
Sbjct: 1439 NEAGLGWSGPVCIASLGHFFLKFRKQTNEDTISDNKMTQFAAVHVVEEGSTLVSRFYKPP 1498

Query: 483  NLSLPYRIENCLHSLSITCYQKDSLVPEVLGPACSADYVWDDLTLPRKLVVRI 535
            N SLPYRIENCLHSLSIT YQK  L PEVLGPACSADYVWDDLTLPR+L+  I
Sbjct: 1499 NTSLPYRIENCLHSLSITYYQKGLLEPEVLGPACSADYVWDDLTLPRRLLAAI 1551



 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/422 (82%), Positives = 376/422 (89%), Gaps = 10/422 (2%)

Query: 637  LLEHVTQEEDDNERKDFSPIVVAKLGNLHMITISNNHQKYNQFSIQYLNFDLKWKGAPFS 696
            + ++++ EEDDNE KDF+PIV+AKLGNLHMI+ISNNHQ YNQFS+QY+N +LKW GAPF+
Sbjct: 2224 ITKNLSSEEDDNESKDFTPIVIAKLGNLHMISISNNHQTYNQFSLQYINLELKWNGAPFA 2283

Query: 697  SMLRGHQLDYSESNDSAXXXXXXXXXXXXXXXQLKYSSIFLQPIDLNIDEETLMKIVSFW 756
            SMLR HQLDY +SNDS                Q +YSSIFLQPIDLN+DEETLMKI SFW
Sbjct: 2284 SMLRRHQLDYCDSNDSVLTVVFVLLASSSNVKQFRYSSIFLQPIDLNLDEETLMKIASFW 2343

Query: 757  RSSLSASESQRYYFDHFEVHPIKIIANFIPGEPRSSYSSAQEALRSLIHSVVKVPSIKSR 816
            R+SL+ SESQR+YFDHFE+HPIKIIANFIPGE RSSYSS QEALRSLIHSV+KVP IK+ 
Sbjct: 2344 RTSLNESESQRFYFDHFEIHPIKIIANFIPGESRSSYSSTQEALRSLIHSVIKVPPIKNM 2403

Query: 817  VVELNGVLITHALITMRELFIKCAQHYSWYTMRAIYIAKGSTLLPPEFVSIFDDLASSSL 876
            VVELNGVLITHALITMRELFIKCAQHYSWYTMRAIYIAKGS LLPP+FVSIFDDLASSSL
Sbjct: 2404 VVELNGVLITHALITMRELFIKCAQHYSWYTMRAIYIAKGSPLLPPDFVSIFDDLASSSL 2463

Query: 877  DVFFDPSRGLANFPGFTLGTFKLISKCIKGKGFSGTKRYFGDLGKT----------LRSA 926
            DVFFDPSRGLAN PGFTLGTFK+ISKCIKGKGFSGTKRYFGDLGKT          LRSA
Sbjct: 2464 DVFFDPSRGLANLPGFTLGTFKIISKCIKGKGFSGTKRYFGDLGKTHINQFMTGQQLRSA 2523

Query: 927  GSNIAFAAVAEISDSVLKGAEANGFDGLMSGFHQGILKLAMEPSFLGTALMEGGPDRKIL 986
            GSNIAFA VAEISDSVLKGAEANGF+GL+SGFHQGILKLAMEPS LGTALMEGGPDRKIL
Sbjct: 2524 GSNIAFAVVAEISDSVLKGAEANGFNGLVSGFHQGILKLAMEPSVLGTALMEGGPDRKIL 2583

Query: 987  LDQSPGVDELYIEGYIQAMLDTVYRQEYLRVRVIDNQVILKNLPPNHSLINEITNRVKEF 1046
            LD+SPGVDELYIEGYIQAMLDTVYRQEYLRVRVIDNQVILKNLPPNHSLINEIT RVKEF
Sbjct: 2584 LDRSPGVDELYIEGYIQAMLDTVYRQEYLRVRVIDNQVILKNLPPNHSLINEITGRVKEF 2643

Query: 1047 LV 1048
            LV
Sbjct: 2644 LV 2645



 Score =  184 bits (468), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/123 (73%), Positives = 104/123 (84%), Gaps = 1/123 (0%)

Query: 523  DDLTLPRKLVVRINDSLQLREIKLDKVQAWRPFYKLGQQGVLAPRLLFDKGSRDQRVSFR 582
            +DL+L ++    + DSLQLREIKLDKV+AW+PF+KLGQQ VLAPRLL DK SRDQ + F 
Sbjct: 1761 NDLSLSQQSNT-LKDSLQLREIKLDKVRAWKPFHKLGQQRVLAPRLLLDKRSRDQMMGFS 1819

Query: 583  EPSGMEMEKVGFEIYAEGPTRVLRICEISDSFKRQTVHALCAKIQLRVSQFAVHLLEHVT 642
            E +G+EM KVG+EIYAEGPTRVLRICEISDSFKR TV  LCAKIQLR SQFAVHLLEHV 
Sbjct: 1820 EHNGLEMTKVGYEIYAEGPTRVLRICEISDSFKRDTVLDLCAKIQLRASQFAVHLLEHVK 1879

Query: 643  QEE 645
            Q++
Sbjct: 1880 QKQ 1882


>Glyma02g06890.2 
          Length = 302

 Score =  254 bits (649), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/145 (88%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 904  IKGKGFSGTKRYFGDLGKTLRSAGSNIAFAAVAEISDSVLKGAEANGFDGLMSGFHQGIL 963
            IKGKGFSGTKRYFGDLG TLRSAGSNIAFAAVAEISDSVLKGA        +SGF QGIL
Sbjct: 143  IKGKGFSGTKRYFGDLGTTLRSAGSNIAFAAVAEISDSVLKGA-VKELPPFVSGFQQGIL 201

Query: 964  KLAMEPSFLGTALMEGGPDRKILLDQSPGVDELYIEGYIQAMLDTVYRQEYLRVRVIDNQ 1023
            KLAMEPS L TALMEGGPDRKILLD+SPGVDELYIEGYIQAMLD++YRQEYLRVRVIDNQ
Sbjct: 202  KLAMEPSVLRTALMEGGPDRKILLDRSPGVDELYIEGYIQAMLDSLYRQEYLRVRVIDNQ 261

Query: 1024 VILKNLPPNHSLINEITNRVKEFLV 1048
            VILKNLPPNHSLINEIT RVKEFLV
Sbjct: 262  VILKNLPPNHSLINEITGRVKEFLV 286