Miyakogusa Predicted Gene
- Lj4g3v0818970.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0818970.1 Non Chatacterized Hit- tr|I1K265|I1K265_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.372
PE=4,83.21,0,UPF0034,tRNA-dihydrouridine synthase, conserved site;
FMN-linked oxidoreductases,NULL; no descriptio,CUFF.48089.1
(414 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma05g20510.1 692 0.0
Glyma17g18490.1 677 0.0
Glyma01g23820.1 127 3e-29
Glyma01g23820.3 123 5e-28
Glyma08g36840.1 113 3e-25
Glyma01g23820.2 104 2e-22
Glyma04g00940.1 74 3e-13
Glyma10g11570.1 68 2e-11
Glyma08g09540.1 64 3e-10
Glyma12g13520.1 63 7e-10
Glyma05g26560.1 59 9e-09
>Glyma05g20510.1
Length = 402
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/411 (83%), Positives = 366/411 (89%), Gaps = 17/411 (4%)
Query: 1 MKPEPKPFSLLSIIHNRNHSHLAAKPHPLMAQTPPSPDPNSPQQTDNDDHQQPPFSPPRN 60
MKP+PKP+S L + N A + PLMAQTP S D P +DND H R+
Sbjct: 1 MKPKPKPYSFLPL----NRFLRALQSRPLMAQTPTSLDAEHP--SDNDQHMG---FRARS 51
Query: 61 LAGETQVERAWAHWTKLGRPKFLVAPMVDNSELPFRMLCRKYGAEGAYTPMLHSRIFTET 120
L+GE++ E+AWAHWTKLGRP+F+VAPMVDNSELPFRMLCRKYGA+GAYTPMLHSRIFTET
Sbjct: 52 LSGESRAEQAWAHWTKLGRPRFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTET 111
Query: 121 EKYRKEEFTTCKEDRPLFVQFCANDPDVLLEAARKVEPYCDYVDINLGCPQRIAKRGYYG 180
EKYR EEFTTCKEDRPLFVQFCANDPDVLLEAARKVE +CDYVDINLGCPQRIAKRGYYG
Sbjct: 112 EKYRNEEFTTCKEDRPLFVQFCANDPDVLLEAARKVERFCDYVDINLGCPQRIAKRGYYG 171
Query: 181 AFLMDNLPLVKSLVENLALNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCFLLAVHGRTR 240
AFLMDNLPLVKSLVE LA+NLQVPVSCKIRLFPNLEDTLKYARMLEEAGC LLAVHGRTR
Sbjct: 172 AFLMDNLPLVKSLVEKLAVNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCMLLAVHGRTR 231
Query: 241 DEKDGKKFRADWKAIKAVKDAVRIPVLANGNIRHVDDVRDCLEETGVEGVLSAETLLENP 300
DEKDGKKFRADWKAI+AVK+AVRIPVLANGNIRH+DDVRDCLEETGVEGVLSAETLLENP
Sbjct: 232 DEKDGKKFRADWKAIRAVKNAVRIPVLANGNIRHIDDVRDCLEETGVEGVLSAETLLENP 291
Query: 301 ALFAGFRTAEWVSGSEGTIVDSEGTIVDGRLDQADLVIEYLKLCEKYPVPWRMIRSHVHK 360
ALFAGFRTAEWVS +SEGT VDG+LDQADL+IEYLKLCEKYPVPWRMIRSHVHK
Sbjct: 292 ALFAGFRTAEWVS-------ESEGTNVDGKLDQADLLIEYLKLCEKYPVPWRMIRSHVHK 344
Query: 361 MLGDWFSLQPHIREELNQQSKLTFEFLYDMVDRLRATGTRIPLYLKDDRVE 411
+LGDWFSLQPHIREELN+QSKLTFEFLYDMVDRLRATG RIPLY KD +VE
Sbjct: 345 LLGDWFSLQPHIREELNKQSKLTFEFLYDMVDRLRATGIRIPLY-KDTQVE 394
>Glyma17g18490.1
Length = 402
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/412 (82%), Positives = 361/412 (87%), Gaps = 19/412 (4%)
Query: 1 MKPEPKPFSLLSII-HNRNHSHLAAKPHPLMAQTPPSPDPNSPQQTDNDDHQQPPFSPPR 59
MKP+ KP+S L + H R A + PLMAQTP S D P D Q F P R
Sbjct: 1 MKPKHKPYSFLPLTRHFR-----ALQSCPLMAQTPTSLDAEHPAAAD----QHVGF-PAR 50
Query: 60 NLAGETQVERAWAHWTKLGRPKFLVAPMVDNSELPFRMLCRKYGAEGAYTPMLHSRIFTE 119
+L+GE+ ERAWAHW KLGRP+F+VAPMVDNSELPFRMLCRKYGA+GAYTPMLHSRIFTE
Sbjct: 51 SLSGESWAERAWAHWAKLGRPRFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTE 110
Query: 120 TEKYRKEEFTTCKEDRPLFVQFCANDPDVLLEAARKVEPYCDYVDINLGCPQRIAKRGYY 179
TEKYR EEFTTCKEDRPLFVQFCANDPDVLL AARKVEP+CDYVDINLGCPQRIAKRGYY
Sbjct: 111 TEKYRNEEFTTCKEDRPLFVQFCANDPDVLLAAARKVEPFCDYVDINLGCPQRIAKRGYY 170
Query: 180 GAFLMDNLPLVKSLVENLALNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCFLLAVHGRT 239
GAFLMDNLPLVKSLVE LA+NLQVPVSCKIRLFPNLEDTLKYARMLEEAGC LLAVHGRT
Sbjct: 171 GAFLMDNLPLVKSLVEKLAVNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCMLLAVHGRT 230
Query: 240 RDEKDGKKFRADWKAIKAVKDAVRIPVLANGNIRHVDDVRDCLEETGVEGVLSAETLLEN 299
RDEKDGKKFRADW AI+AVK+AVRIPVLANGNIRH+DDVRDCLEETGVEGVLSAETLLEN
Sbjct: 231 RDEKDGKKFRADWNAIRAVKNAVRIPVLANGNIRHMDDVRDCLEETGVEGVLSAETLLEN 290
Query: 300 PALFAGFRTAEWVSGSEGTIVDSEGTIVDGRLDQADLVIEYLKLCEKYPVPWRMIRSHVH 359
PALF GFRTAEWVS +SEGT +DG+LDQADL+IEYLKLCEKYPVPWRMIRSHVH
Sbjct: 291 PALFDGFRTAEWVS-------ESEGTNLDGKLDQADLLIEYLKLCEKYPVPWRMIRSHVH 343
Query: 360 KMLGDWFSLQPHIREELNQQSKLTFEFLYDMVDRLRATGTRIPLYLKDDRVE 411
K+LGDWFSLQPHIREELN+QSKLTFEFLYDMVDRLR+TGTRIPLY K+ VE
Sbjct: 344 KLLGDWFSLQPHIREELNKQSKLTFEFLYDMVDRLRSTGTRIPLY-KNTEVE 394
>Glyma01g23820.1
Length = 348
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 128/279 (45%), Gaps = 33/279 (11%)
Query: 50 HQQPPFSPPRNLAGETQVERAWAHWTKLGRP-------KFLVAPMVDNSELPFRMLCRKY 102
H QP FS ET+ W H P K ++APMV LPFR+L +Y
Sbjct: 2 HLQPAFSV------ETKKGATWEHRICQTHPTNMEYRNKLVLAPMVRVGTLPFRLLAAQY 55
Query: 103 GAEGAY----------------TPMLHSRIFTETEKYRKEEFTTCKEDRPLFV-QFCAND 145
GA+ Y ++ S F E + + F TC E++ V Q +D
Sbjct: 56 GADITYGEEIIDHKMLKCDRQINELIGSTDFVE-KGTKNVVFRTCDEEKDTVVFQIGTSD 114
Query: 146 PDVLLEAARKVEPYCDYVDINLGCPQRIAKRGYYGAFLMDNLPLVKSLVENLALNLQVPV 205
L A+ V VDIN+GCP+ + G GA L+ L+ ++ L NL PV
Sbjct: 115 AVRALATAQLVCNDVAAVDINMGCPKSFSVSGGMGAALLSKPELIHDILTTLRRNLNTPV 174
Query: 206 SCKIRLFPNLEDTLKYARMLEEAGCFLLAVHGRTRDEKDGKKFRADWKAIKAVKDAVRIP 265
+CKIRL + DT++ AR +E+ G LAVHG R D + A W I V A+ IP
Sbjct: 175 TCKIRLLKSPHDTVELARRIEKTGVSALAVHG--RKVPDRPRDPAKWNEIADVVSALSIP 232
Query: 266 VLANGNIRHVDDVRDCLEETGVEGVLSAETLLENPALFA 304
V+ANG++ DD TG V+ A L N ++F+
Sbjct: 233 VIANGDVFEYDDFERIKSATGASSVMVARGALWNASMFS 271
>Glyma01g23820.3
Length = 320
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 118/243 (48%), Gaps = 20/243 (8%)
Query: 79 RPKFLVAPMVDNSELPFRMLCRKYGAEGAY----------------TPMLHSRIFTETEK 122
R K ++APMV LPFR+L +YGA+ Y ++ S F E +
Sbjct: 4 RNKLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKMLKCDRQINELIGSTDFVE-KG 62
Query: 123 YRKEEFTTCKEDRPLFV-QFCANDPDVLLEAARKVEPYCDYVDINLGCPQRIAKRGYYGA 181
+ F TC E++ V Q +D L A+ V VDIN+GCP+ + G GA
Sbjct: 63 TKNVVFRTCDEEKDTVVFQIGTSDAVRALATAQLVCNDVAAVDINMGCPKSFSVSGGMGA 122
Query: 182 FLMDNLPLVKSLVENLALNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCFLLAVHGRTRD 241
L+ L+ ++ L NL PV+CKIRL + DT++ AR +E+ G LAVHG R
Sbjct: 123 ALLSKPELIHDILTTLRRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHG--RK 180
Query: 242 EKDGKKFRADWKAIKAVKDAVRIPVLANGNIRHVDDVRDCLEETGVEGVLSAETLLENPA 301
D + A W I V A+ IPV+ANG++ DD TG V+ A L N +
Sbjct: 181 VPDRPRDPAKWNEIADVVSALSIPVIANGDVFEYDDFERIKSATGASSVMVARGALWNAS 240
Query: 302 LFA 304
+F+
Sbjct: 241 MFS 243
>Glyma08g36840.1
Length = 292
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 87 MVDNSELPFRMLCRKYGAEGAYTPMLHSRIFTETEKYRKE---------------EFTTC 131
MV LPFR+L +YGA+ Y + + E+ E F TC
Sbjct: 1 MVRVGTLPFRLLAAQYGADITYCEEIIDHKMLKCERRINELIGSTDFVEKGTNNVVFRTC 60
Query: 132 KE--DRPLFVQFCANDPDVLLEAARKVEPYCDYVDINLGCPQRIAKRGYYGAFLMDNLPL 189
E DR +F Q +D L A+ V VDIN+GCP+ + G GA L+ L
Sbjct: 61 DEEKDRVVF-QIGTSDAVRALTTAQLVCNDVAAVDINMGCPKSFSVSGGMGAALLSKPEL 119
Query: 190 VKSLVENLALNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCFLLAVHGRTRDEKDGKKFR 249
+ ++ L NL PV+CKIRL + DT++ AR +E+ G LAVHG R D +
Sbjct: 120 IHDILTTLKRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHG--RKVPDRPRDP 177
Query: 250 ADWKAIKAVKDAVRIPVLANGNIRHVDDVRDCLEETGVEGVLSAETLLENPALFA 304
A W I V A+ IPV+ NG++ DDV TG V+ A L N ++F+
Sbjct: 178 AKWNEIADVVSALSIPVIENGDVFENDDVERIKSATGASSVMVARGALWNASMFS 232
>Glyma01g23820.2
Length = 279
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Query: 128 FTTCKEDRPLFV-QFCANDPDVLLEAARKVEPYCDYVDINLGCPQRIAKRGYYGAFLMDN 186
F TC E++ V Q +D L A+ V VDIN+GCP+ + G GA L+
Sbjct: 27 FRTCDEEKDTVVFQIGTSDAVRALATAQLVCNDVAAVDINMGCPKSFSVSGGMGAALLSK 86
Query: 187 LPLVKSLVENLALNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCFLLAVHGRTRDEKDGK 246
L+ ++ L NL PV+CKIRL + DT++ AR +E+ G LAVHG R D
Sbjct: 87 PELIHDILTTLRRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHG--RKVPDRP 144
Query: 247 KFRADWKAIKAVKDAVRIPVLANGNIRHVDDVRDCLEETGVEGVLSAETLLENPALFA 304
+ A W I V A+ IPV+ANG++ DD TG V+ A L N ++F+
Sbjct: 145 RDPAKWNEIADVVSALSIPVIANGDVFEYDDFERIKSATGASSVMVARGALWNASMFS 202
>Glyma04g00940.1
Length = 643
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 10/201 (4%)
Query: 79 RPKFLVAPMVDNSELPFRMLCRKYGAEGAYTPMLHSRIFTETEKYRKEEFTTCKEDRPLF 138
R K +AP+ LPFR +C+ GA+ M + + +
Sbjct: 289 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFG 348
Query: 139 VQFCANDPDVLLEAARKVEPYC--DYVDINLGCPQRIAKRGYYGAFLMDNLPLVKSLVEN 196
VQ C PD + +E C D++DIN+GCP I G+ L+ +KS+VE
Sbjct: 349 VQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEV 408
Query: 197 LALNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCF---LLAVHGRTRDEKDGKKFRADWK 253
+ + P++ K+R E + ++ + G + + +HGR+R ++ K ADW
Sbjct: 409 ASGTAEKPITIKVRT-AYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSK--LADWD 465
Query: 254 AIK--AVKDAVRIPVLANGNI 272
+ A K +PV+ NG++
Sbjct: 466 YVYQCARKAPTTLPVVGNGDV 486
>Glyma10g11570.1
Length = 486
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 112/262 (42%), Gaps = 33/262 (12%)
Query: 80 PKFLVAPMVDNSELPFRMLCRKYGAEG-AYTPMLHSRIFTETEKYRK---EEFTTCKEDR 135
P F VAPM+D ++ +R L R YT ML + ET Y+K + F D+
Sbjct: 9 PLFSVAPMMDWTDHHYRTLARLISKHAWLYTEMLAA----ETIVYQKGNLDRFLAYSPDQ 64
Query: 136 -PLFVQFCANDPDVLLEAARKVEPYC-DYVDINLGCPQ-RIAKRGYYGAFLMDNLPLVKS 192
P+ +Q ++ D L +A YC D ++ N GCP R+A RG +G LM + V
Sbjct: 65 HPIVLQIGGSNLDNLAKATELANAYCYDEINFNCGCPSPRVAGRGCFGVRLMLDPKFVAE 124
Query: 193 LVENLALNLQVPVSCKIRL-------FPNLEDTLKYARMLEEAGCFLLAVHGRTRDEKDG 245
+ +A N VPV+ K R+ + L D + L A F+ +H R K
Sbjct: 125 AISLIAANTNVPVTVKCRIGVDDHDSYNELCDFIYKVSSLSPAKHFV--IHSRKALLKGL 182
Query: 246 KKFRADWKAIKAVK---------DAVRIPVLANGNIRHVDDVRDCLEETGVEGVLSAETL 296
A+ ++I +K D + NG I +D+V L + G GV+
Sbjct: 183 SP--AENRSIPPLKYEYFYGLLRDFPDLSFTINGGIASIDEVNGAL-KAGAHGVMVGRAA 239
Query: 297 LENPALFAG-FRTAEWVSGSEG 317
NP G TA + + S G
Sbjct: 240 YNNPWHILGHVDTAIYGASSSG 261
>Glyma08g09540.1
Length = 430
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 24/240 (10%)
Query: 80 PKFLVAPMVDNSELPFRMLCRKYGAEG-AYTPMLHSRIFTETEKYRKEEFTTCKEDRPLF 138
P F VAPM+D ++ +R L R YT ML + + + P+
Sbjct: 65 PWFSVAPMMDWTDHHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAYSPDQHPIV 124
Query: 139 VQFCANDPDVLLEAARKVEPYC-DYVDINLGCPQ-RIAKRGYYGAFLMDNLPLVKSLVEN 196
+Q ++ + L +A YC D +++N GCP ++A G +G LM N V +
Sbjct: 125 LQIGGSNIENLAKATELANAYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPKFVAEAMSA 184
Query: 197 LALNLQVPVSCKIRL-------FPNLEDTLKYARMLEEAGCFLLAVHGRTRDEKDGKKFR 249
+A + VPVS K R+ + L D + L F++ +R
Sbjct: 185 IAASTNVPVSVKCRIGVDDHDSYNELCDFIYQVSSLSPTKHFII----HSRKALLNGISP 240
Query: 250 ADWKAIKAVK---------DAVRIPVLANGNIRHVDDVRDCLEETGVEGVLSAETLLENP 300
A+ ++I +K D + NG I VD+V E G GV+ NP
Sbjct: 241 AENRSIPPLKYEYFYGLLRDFPDLRFTINGGITSVDEV-SAAREAGAHGVMVGRAAYNNP 299
>Glyma12g13520.1
Length = 32
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 28/31 (90%)
Query: 72 AHWTKLGRPKFLVAPMVDNSELPFRMLCRKY 102
AHW KLGRP+F+VA MVDNSEL FRMLCRKY
Sbjct: 1 AHWAKLGRPRFIVALMVDNSELSFRMLCRKY 31
>Glyma05g26560.1
Length = 307
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 80 PKFLVAPMVDNSELPFRMLCRKYGAEG-AYTPMLHSRIFTETEKYRKEEFTTCKEDRPLF 138
P F VAPM+D ++ +R L R YT ML + + + P+
Sbjct: 65 PWFSVAPMMDWTDHHYRTLVRLISKHAWLYTEMLAAETIVHQKDNLDRFLAYSPDQHPIV 124
Query: 139 VQFCANDPDVLLEAARKVEPYC-DYVDINLGCPQ-RIAKRGYYGAFLMDNLPLVKSLVEN 196
+Q ++ + L +A YC D +++N GCP ++A G +G LM N V +
Sbjct: 125 LQIGGSNIENLAKATELANVYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPKFVAEAMSA 184
Query: 197 LALNLQVPVSCKIRL 211
+A + VPVS K R+
Sbjct: 185 IAASTNVPVSVKCRI 199